Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_D20
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   7.8  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 479 AFPDCNINVKHKKDFDIHDIIFNSAIHNTTEAY--KQKVLEEIEEMLAXCK--LTDAYEE 646
           A PD  ++   K DFDI    F   +H+    Y  ++K L    E+LA  +   T   +E
Sbjct: 311 ALPDDELDKHLKSDFDIESFCF--LLHHLLSLYQTQKKELASSNELLASVRDENTKKLKE 368

Query: 647 LXKIID 664
           L  II+
Sbjct: 369 LQDIIE 374


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 299 LWTI--SEIFCSCIHLYVLIMELLSCDD*KLILAQGVDSQRRIIIK 168
           L+TI  S+I    +H Y  +  +   DD K +    VD  RR+I+K
Sbjct: 359 LFTIVESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMK 404


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 239 VPLSKHIDEYTNKIFPKWSKEPGMLTEKGALLEGHMSEYLTK 364
           VP+S  +DE  N+I  KW+ E G+  EK   L  H  E LT+
Sbjct: 116 VPVS--MDEDNNEIIRKWAPE-GVTVEKKNCLSHH--EVLTR 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,206
Number of Sequences: 5004
Number of extensions: 60807
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)