Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_D18
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.006
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.041
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect(2) = 0.006
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 527 PPXPXPPPPP 556
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 25.0 bits (52), Expect(2) = 0.006
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 536 PXPPPPPXPPXXXXPXS 586
           P P PPP PP    P S
Sbjct: 339 PKPAPPPPPPSSSGPDS 355



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 711 PPXPXPXPPP 740
           PP P P PPP
Sbjct: 338 PPKPAPPPPP 347


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.041
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +1

Query: 610 SPGXGXAPPXXXXPXPPPPPXXRXXRXXPPXPPXPXXRPPXPPL 741
           SP  G  PP    P  PP P        PP P  P   P  P +
Sbjct: 403 SPAGGQLPPSAGAPM-PPIPNMSNMSGMPPLPNMPGSMPTMPTM 445



 Score = 28.7 bits (61), Expect = 0.071
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 660 PPPXPXXXPXXPPXPPXPPXPXPXPPPXXRPXXPXXXXP 776
           P P P   P  P     PP P   PPP   P  P    P
Sbjct: 23  PQPSPHQSPQAPQRGS-PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 527 PPXPXPPPPPXPPXXXXPXSLP 592
           PP P   PPP  P    P   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 634 PXXXXPXPPPPPXXRXXRXXPPXPPXPXXRPPXPPLXXAP 753
           P    P P P P           PP P   PP      AP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
 Frame = +2

Query: 590 PXPXXXXXPXXGPRXXXXXXXXPPPP--PPXXPPAXXP 697
           P P     P    R         PPP  PP  PP+  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 711 GXGGXGXXAGGXXGGGGGG 655
           G  G     G   GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -3

Query: 627 GPXXGXXXXXGXGXEXGXXXXGGXGGGGGXGXG 529
           GP          G   G    G   GGGG G G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 542  PPPPPXPP 565
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 656  PPPPPPXXPPA 688
            PPPPPP  PP+
Sbjct: 1355 PPPPPP--PPS 1363


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 610  SPGXGXAPPXXXXPXPPPPP 669
            S G     P    P PPPPP
Sbjct: 1844 SVGSARNIPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,773
Number of Sequences: 438
Number of extensions: 8765
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)