Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_D07
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.35
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.62
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.82
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.9
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 5.8
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 7.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 7.6
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.35
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 488 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 664
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 665 SNTT 676
+T
Sbjct: 361 PTST 364
Score = 29.5 bits (63), Expect = 0.62
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 488 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS 667
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Score = 29.1 bits (62), Expect = 0.82
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 488 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 664
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 665 S 667
+
Sbjct: 250 T 250
Score = 29.1 bits (62), Expect = 0.82
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 488 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 664
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 665 SNTT 676
+T
Sbjct: 307 PTST 310
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 494 PKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSN 670
P T + S P P T+ TS S PP NST + +T V + SST P P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321
Query: 671 TT 676
T+
Sbjct: 322 TS 323
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 479 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSI--TRKVLVMTVSSTVI 649
L++ TP T P S S W TT T S T+ST + T + SST I
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 650 APLTPSNTT 676
+ + S T
Sbjct: 658 STSSSSTAT 666
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.3 bits (65), Expect = 0.35
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 482 HSVTPKTKPARKSPGSLPPCWKTTEF--TSRSCPPRT--NST*SSITRKVLVMTVSSTVI 649
H+ T T P S + TT T+ + PP T NST + + V T +TV+
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVV 134
Query: 650 APLTPSNTTGYLEPSMYESDVMFL 721
P T NTT + P+ + + F+
Sbjct: 135 PPTTHVNTTTVVPPTTHANTTSFV 158
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 488 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLVMTVSSTVIAPLTP 664
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 665 SNTTGYLEPSMY 700
NTT + P+ +
Sbjct: 128 VNTTTVVPPTTH 139
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 570 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 469
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.82
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 214 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 357
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 181 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 297
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 672 VFEGVSGAITVDDTVIT 622
V G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 418 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 510
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 317 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 138
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 137 EASAHTARTKA 105
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,528
Number of Sequences: 5004
Number of extensions: 73820
Number of successful extensions: 280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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