Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_D05
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 373 APGDQ-MPDLDVPVPEK-TPP-PSEAPRDSPSPTEPPKLN 483
           APG Q  P      P++ +PP PS+ P     P  PP  N
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 289 CGRSLRGCGRRVLSQRSLPESHRRPYRCTDRV 194
           C R LR  GR+ +     PE+    Y  +DR+
Sbjct: 403 CLRELRNLGRKTIMVNYNPETVSTDYDMSDRL 434


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 303 LAGNTVAVHFEDAVA 259
           L G TVAV+F D +A
Sbjct: 938 LVGKTVAVNFRDVIA 952


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 RRQTSTATDLICTQKKANPVSTS 211
           +RQ+  A DL+ T+K  N + T+
Sbjct: 401 KRQSVPANDLLTTEKDNNEIVTA 423


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -3

Query: 297 GNTVAVHFEDAVAAF*ASGLCRRAIVDLTDVLTGFAFFCVQIKSVAVEVWRLPHVAES 124
           G  + V F   +A+  A+ +   A++ +  VLT        I  +    W L  +  S
Sbjct: 422 GEVITVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 654 AQQATTPPSRCTXHTHHAPSQFLHDVKLGPKVH 556
           A++   PP     H  HAP Q +      PK H
Sbjct: 267 ARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAH 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,287
Number of Sequences: 438
Number of extensions: 4834
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)