Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_D03
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    29   0.65 
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   4.6  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.0  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 709 STSMKKRSSRNRQCRXLQSLFYTENEXLXTXMIELPYK---XPGIPXGSWSAP 858
           +T +   SSRN + R L+    + ++   T M ELP+     P  P  +WS+P
Sbjct: 213 ATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQELPFSLDYRPFSPLLAWSSP 265


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 465 TRSPEQRICSEAKWTTLXSALRRMPLISSTVGRTNRLKDT*RLLSAKTKLTP 620
           +++ E+   +  K+T   + L R   +   +GR + ++ T R+LS +TK  P
Sbjct: 154 SKNAEEGFDALNKFTVDLTELARNGQLDPVIGREDEIRRTIRVLSRRTKNNP 205


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 358 LLSLPSPKDFPYLFLGLCTGSRLVPR 281
           L  LP P   PYLF     G  L+PR
Sbjct: 100 LTPLPHPMLIPYLFAPKVVGKNLLPR 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,818
Number of Sequences: 5004
Number of extensions: 66569
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)