Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_D03
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   1.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 621 PXPLQCLTSFSSRGHW 668
           P P++ L +F S GHW
Sbjct: 226 PLPVRVLPNFPSSGHW 241


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 316 GRDKGNPWGRGGSR 357
           GR KG   G+GGSR
Sbjct: 79  GRGKGRGHGKGGSR 92



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 313 QGRDKGNPWGRGGSRVNT 366
           +G  KG   GRGG+R  T
Sbjct: 84  RGHGKGGSRGRGGNRGRT 101


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 331 FPYLFLGLCTGSRLVPRKAAASRREETLSHSCRRLGCRIP 212
           F + + G      L+  + +   RE+ ++++CR L   +P
Sbjct: 416 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 331 FPYLFLGLCTGSRLVPRKAAASRREETLSHSCRRLGCRIP 212
           F + + G      L+  + +   RE+ ++++CR L   +P
Sbjct: 384 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 423


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 690 ETEEKXFHVDEKTIIKKPTMPXL 758
           ETEE+   +  K I K P+MP L
Sbjct: 632 ETEERLPPLPPKRIRKMPSMPLL 654


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 757 LQSLFYTENEXLXTXMIELPYKXPGIPXGSWSAP 858
           LQSL  T ++     + E+P    G P  S S+P
Sbjct: 105 LQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSP 138


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 709  STSMKKRSSRNRQCRXLQS 765
            +TSMK  SSR RQ R  Q+
Sbjct: 1758 ATSMKSVSSRRRQQRKQQT 1776


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 709  STSMKKRSSRNRQCRXLQS 765
            +TSMK  SSR RQ R  Q+
Sbjct: 1754 ATSMKSVSSRRRQQRKQQT 1772


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 419 SRISGRILRNADLIIRMCV 363
           SRIS RI RN  L+   C+
Sbjct: 34  SRISNRISRNRVLLRGQCI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,595
Number of Sequences: 438
Number of extensions: 4612
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)