Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_D02
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 250  WTYPLGLQYPEGIHPPPGVEGFXVAPKKPQKKNYSPTPXRSXPXKXKGXPN 402
            +T P G+  P GI  P  +EG    P  P    ++P P    P    G PN
Sbjct: 1132 FTSPGGIPGPNGIKMPSFMEGMPHLPFTP-FNFWNPPPFMPSPF-MAGAPN 1180


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 99  NLHLHSPYAVTIPXRKSKILREFPIVRS 16
           N  +H P  + I  +  KILR +P+  S
Sbjct: 137 NTVIHQPRIIIIDLKTDKILRIYPLKSS 164


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 609 PXXXXPPPPPPXXXXP 656
           P    PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 625 PPPPPPXXAXP 657
           PPPPPP  + P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 606 PPXXXXPPPPP 638
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 299 GGGWIPSGYCSPRGYVHLPA 240
           GG   P GY   +G+VHL A
Sbjct: 77  GGLEEPKGYTLFKGFVHLGA 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,773
Number of Sequences: 438
Number of extensions: 10998
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)