Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_C23
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 33 0.23
10_07_0039 - 12269928-12270103,12270871-12271015,12271066-122710... 31 0.94
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 3.8
07_01_0975 + 8223269-8224354 29 6.6
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 6.6
04_04_0265 + 24040689-24041051,24041210-24041457,24041845-240423... 28 8.7
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 8.7
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 28 8.7
01_07_0382 + 43188478-43190919 28 8.7
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 323 CGWSGYSAPAPRSQRPSCR 267
CG+ GYS PAP++ RPSCR
Sbjct: 63 CGY-GYSTPAPKAPRPSCR 80
>10_07_0039 -
12269928-12270103,12270871-12271015,12271066-12271094,
12271394-12271478
Length = 144
Score = 31.5 bits (68), Expect = 0.94
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 202 GARVVPGAAREPRHRPAHSHTL 267
G R VPG + PRHRP H T+
Sbjct: 83 GRRAVPGQSTVPRHRPRHDPTI 104
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 417 APTCSQPEPSYTLPLPPTRNEGPMSQYCKAS 325
+P+ SQP PSY+ P T + GP Y S
Sbjct: 1787 SPSYSQPSPSYSPTSPYTTSGGPSPDYSPTS 1817
>07_01_0975 + 8223269-8224354
Length = 361
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -1
Query: 631 SGCRASGPGXSEAMSCRCATTR*SPARWPRSTPQRSSDPQRLPASRRSARP 479
SG AS PG S + + SP+ P S+P SS P P+S S P
Sbjct: 220 SGSAASAPGPSPSDDTGYGGSSGSPSSSPSSSP--SSSPSGSPSSSPSGSP 268
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 351 PMSQYCKASMWLVWIFRTSSSQPASV-LQKGVTVCWTMTRLTGRAR 217
P+ +YC +W +WI ++ QP V Q+ + W+ GRA+
Sbjct: 816 PLVKYCPPELWRMWI--SNLLQPLFVHCQQALDFSWSSLLREGRAK 859
>04_04_0265 +
24040689-24041051,24041210-24041457,24041845-24042365,
24042433-24042968
Length = 555
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 152 AISVRSELRASASTTAEWRRAMSRSGACQHVS 57
A+S+R+ELR +A+W + M R H +
Sbjct: 185 AMSLRNELRGPRQNSADWYKYMQRGAEAVHAA 216
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = -2
Query: 375 LPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGVTVCWTMTRLT 229
LP T + G S K S + R SSS +S +QK V+VC T T T
Sbjct: 381 LPRTGHSGRSSGGSKRSFGAKGLIRRSSSF-SSDIQKDVSVCTTTTEQT 428
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 93 PPPLGSCTRARSQLASHRNSS 155
PP LGSC+R R A H N S
Sbjct: 221 PPELGSCSRLRVLKAGHNNLS 241
>01_07_0382 + 43188478-43190919
Length = 813
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 374 NGXVYEGSGWLHVGAHTYGYNSR 442
+G V EG W HV H YG R
Sbjct: 555 SGLVIEGKHWFHVMGHGYGLTPR 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,771,299
Number of Sequences: 37544
Number of extensions: 454496
Number of successful extensions: 1872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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