Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C22
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +3

Query: 414 RKKXXPP-PPGXXXFFLXPPPXXPQKXPGX--PRPPXGGXGXPPP 539
           R +  PP   G     L PPP  P+       P PP G    PPP
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +3

Query: 429 PPPPGXXXFFLXPPPXXPQKXPGXPRPPXGGXGXPPPXGG 548
           PPPP        P P      P  P P  GG   PPP  G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP--PAPIMGGPPPPPPPPG 769



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 465 PPPXXPQKXPGXPRPPXGGXGXPPP 539
           PPP      P  P PP G  G  PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
 Frame = +3

Query: 435  PPGXXXFFLXPPPXXPQKXPGXPRPPXGGXGXPPPXGG*YXSPQ-NRXXPPKKXXAQXPP 611
            PP        PP   P   P  P+P       P P  G    P+     PP    ++ PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 465  PPPXXPQKXPGXPRPPXGGXGXPPP 539
            PP   P + P  P+P  G    PPP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/59 (25%), Positives = 18/59 (30%)
 Frame = +3

Query: 435  PPGXXXFFLXPPPXXPQKXPGXPRPPXGGXGXPPPXGG*YXSPQNRXXPPKKXXAQXPP 611
            PP        PP   P   P  P+P       P P G       +   PP    +  PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,595
Number of Sequences: 5004
Number of extensions: 19899
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)