Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C21
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    86   5e-18
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   6.1  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   8.0  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +3

Query: 99  MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 275
           M+N+AG+ VDLY PRKCSA+ R+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 276 RRMGESDDCIVRLT 317
           R  GESDDCI RLT
Sbjct: 60  RSKGESDDCINRLT 73


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -1

Query: 229 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR-PHDTRELTRCE 53
           P+     A+T  TE W++A+    +A  F     S       C  Y+R   D       E
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLRKARDFGGDNEFE 541

Query: 52  SKIFKEFPIVRSVV 11
           S++     + R VV
Sbjct: 542 SRLIIRVQLARHVV 555


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -1

Query: 331 YTIFLVNLTMQSSDSPILR----IAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMR 164
           + IF+ + T  S    IL+    +    +  L VS+      S   ++     W+  W  
Sbjct: 139 FDIFMKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPM 198

Query: 163 RLLAEHFLGQYKSTNSPASFCILYVR 86
             L E F+   + TN+     + Y+R
Sbjct: 199 MNLQETFIYWDRCTNACLRLLLCYIR 224


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 199 SCTEAWSLAWMRRLLAEHFLGQYKST 122
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,567
Number of Sequences: 5004
Number of extensions: 51252
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)