Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_C21
(871 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21 pro... 113 8e-25
CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein. 113 8e-25
BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21 p... 113 8e-25
AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21 p... 113 8e-25
AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21 p... 113 8e-25
AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21 p... 113 8e-25
BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein. 111 2e-24
AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21 p... 95 3e-19
AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21 p... 71 4e-12
BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein. 71 5e-12
AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21 p... 71 5e-12
X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation f... 66 1e-10
>L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 113 bits (272), Expect = 8e-25
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTRKMVYWAKNY 347
RMGESDD I+RL + +KN+
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein.
Length = 83
Score = 113 bits (272), Expect = 8e-25
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTRKMVYWAKNY 347
RMGESDD I+RL + +KN+
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 113 bits (272), Expect = 8e-25
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTRKMVYWAKNY 347
RMGESDD I+RL + +KN+
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 113 bits (272), Expect = 8e-25
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTRKMVYWAKNY 347
RMGESDD I+RL + +KN+
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 113 bits (272), Expect = 8e-25
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTRKMVYWAKNY 347
RMGESDD I+RL + +KN+
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 113 bits (272), Expect = 8e-25
Identities = 53/83 (63%), Positives = 63/83 (75%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTRKMVYWAKNY 347
RMGESDD I+RL + +KN+
Sbjct: 61 RMGESDDSILRLAKADGIVSKNF 83
>BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein.
Length = 81
Score = 111 bits (268), Expect = 2e-24
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RMGESDDCIVRLTR 320
RMGESDD I+RL +
Sbjct: 61 RMGESDDSILRLAK 74
>AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21
protein.
Length = 90
Score = 95.1 bits (226), Expect = 3e-19
Identities = 43/62 (69%), Positives = 49/62 (79%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 278
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 279 RM 284
RM
Sbjct: 61 RM 62
>AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21
protein.
Length = 54
Score = 71.3 bits (167), Expect = 4e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +3
Query: 162 RLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTR 320
R+I AKDHAS+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL +
Sbjct: 2 RIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAK 54
>BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein.
Length = 66
Score = 70.9 bits (166), Expect = 5e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGR 233
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+V GR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVSWEPGR 45
>AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21
protein.
Length = 66
Score = 70.9 bits (166), Expect = 5e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGR 233
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A+V GR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVSWEPGR 45
>X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation
factor protein.
Length = 97
Score = 66.5 bits (155), Expect = 1e-10
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +3
Query: 99 MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIA 209
MQNDAGEFVDLY PRKCSAS R+I AKDHAS+Q+ +A
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVA 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,910,112
Number of Sequences: 237096
Number of extensions: 2089732
Number of successful extensions: 3456
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3456
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -