Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C21
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   103   2e-22
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  103 bits (246), Expect = 2e-22
 Identities = 49/76 (64%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
 Frame = +3

Query: 99  MQNDAGEFVDLYCPRKCSASKRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 275
           MQNDAG+ V+LY PRKCS+S R+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 276 RRMGESDDCIVRLTRK 323
           RRMGESDD I+RL +K
Sbjct: 61  RRMGESDDAILRLAQK 76


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = -1

Query: 268  PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 89
            PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792  PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 88   RPHDTRELTRCESKI 44
            +P+   + T C+SK+
Sbjct: 852  QPY---QFT-CDSKV 862


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = -1

Query: 268  PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 89
            PQ+ +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792  PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 88   RPHDTRELTRCESKI 44
            +P+   + T C+SK+
Sbjct: 852  QPY---QFT-CDSKV 862


>Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical
           protein ZC376.2 protein.
          Length = 670

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = +3

Query: 9   PTTDL-TIGNSLKILLSHLVNSRVSCGRTY----KMQNDAGEFVDLY-CPRKCSASKRLI 170
           P+ D+  IGN L  ++SHL ++     +T+    K+ N+  EF+ L    RK    K++ 
Sbjct: 546 PSVDIFIIGNLLNPIMSHLNHNETGPDKTFEQFDKLYNEREEFLKLLKAVRKLEIQKKMW 605

Query: 171 HAKDHASVQL-VIADVDPATGRAADTSKMYVV 263
             +    + L  + D++       +T   +++
Sbjct: 606 RGRSSKDLMLKELVDLEKINEEEQETGANFLL 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,894
Number of Sequences: 27780
Number of extensions: 314666
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)