Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C21
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              28   0.13 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 362 MNEMLIVFSPVYHLSC*PHDAIIRLSHPSDSPTDNIHFRC 243
           +NE  + FS +Y +S    D  + ++H S    DN+  +C
Sbjct: 293 VNEFYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEIKC 332


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 61  LSIPVYRVDVHIKCRTTPVNSLTCTARGNARPANAS 168
           L+IP  ++D   KC    + S+  T+     P  A+
Sbjct: 390 LNIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRAT 425


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +2

Query: 8   SNYRSHYREFLKDFAFASCQFPCIVWTYI*NAERRR*IR*LVLPEEM-----LGQQTPHP 172
           +NY ++Y++  K++     Q P  V  Y  N   R     + + E++     +G  TP P
Sbjct: 107 NNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPSTPFP 166

Query: 173 R 175
           R
Sbjct: 167 R 167


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +2

Query: 8   SNYRSHYREFLKDFAFASCQFPCIVWTYI*NAERRR*IR*LVLPEEM-----LGQQTPHP 172
           +NY ++Y++  K++     Q P  V  Y  N   R     + + E++     +G  TP P
Sbjct: 107 NNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGPSTPFP 166

Query: 173 R 175
           R
Sbjct: 167 R 167


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 322 RWYTGLKTINISFIKQLFYK 381
           +W+  +K  N+SF KQ   K
Sbjct: 365 KWWWNMKISNLSFDKQSLLK 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,965
Number of Sequences: 438
Number of extensions: 4641
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)