Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C19
         (1045 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.62 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +2

Query: 494 APXFXXPPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
           AP     PPP    GG   PPPP        PPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 487 GGGPPXXXXPPPXXXXGGXXFSPP 558
           G GPP    PPP    GG  +  P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 203 PGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPP 236



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 216 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 229 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 242 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 255 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 281 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 294 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPPXXKKK-KXXPPP 595
           P    PPPP     G   PPPP   +  +  PPP
Sbjct: 307 PGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 497 PXFXXPPPPKXXXGGXXFPPPP 562
           P    PPPP     G   PPPP
Sbjct: 320 PGEHMPPPPMHHEPGEHMPPPP 341


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 512 PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
           PPPP         P PP  +     PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,203
Number of Sequences: 5004
Number of extensions: 17946
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)