Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_C19
(1045 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.34
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.78
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.78
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.78
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 1.8
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 1.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 3.1
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 9.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 9.6
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.34
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 512 PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
PPPP+ G PPPP + PPP
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPP 152
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.78
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 488 GGAPXFXXPPPPKXXXGGXXFPPPP 562
GG P PPPP GG PPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 488 GGAPXFXX--PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
GG P PPPP G PPPP K PPP
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.78
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 488 GGAPXFXXPPPPKXXXGGXXFPPPP 562
GG P PPPP GG PPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 488 GGAPXFXX--PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
GG P PPPP G PPPP K PPP
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.78
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 488 GGAPXFXXPPPPKXXXGGXXFPPPP 562
GG P PPPP GG PPPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +2
Query: 488 GGAPXFXX--PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
GG P PPPP G PPPP K PPP
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 487 GGGPPXXXXPPPXXXXGGXXFSPPXXXXKKKXXXPPP 597
G PP PPP GG PP + PPP
Sbjct: 788 GAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 487 GGGPPXXXXPPPXXXXGGXXFSPPXXXXKKKXXXPPP 597
G PP PPP GG PP + PPP
Sbjct: 788 GAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Frame = +2
Query: 491 GAPXFXXPPPPKXXX----GGXXFPPPPXXKKKKXXPPP 595
G P PPPP GG PPPP + PPP
Sbjct: 312 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Frame = +2
Query: 491 GAPXFXXPPPPKXXX----GGXXFPPPPXXKKKKXXPPP 595
G P PPPP GG PPPP + PPP
Sbjct: 322 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 3.1
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 491 GAPXFXXPPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
G P PPPP PPPP + PPP
Sbjct: 26 GPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPP 60
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 512 PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
PPPP+ PPPP + ++ PPP
Sbjct: 94 PPPPRNNCLPPPGPPPPCQQYQQPQPPP 121
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 512 PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
PPPP+ PPPP + ++ PPP
Sbjct: 94 PPPPRNNCLPPPGPPPPCQQYQQPQPPP 121
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 512 PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
PPPP+ PPPP + ++ PPP
Sbjct: 94 PPPPRNNCLPPPGPPPPCQQYQQPQPPP 121
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.3 bits (60), Expect = 9.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +2
Query: 512 PPPPKXXXGGXXFPPPP 562
PPPP GG PPPP
Sbjct: 41 PPPPPPCGGGYEAPPPP 57
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 512 PPPPKXXXGGXXFPPPPXXKKKKXXPPP 595
PPPP GG PPPP PPP
Sbjct: 84 PPPPPMFAGG--IPPPPPMMGGIPPPPP 109
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 596 GGGXXXFFFXXXXGGEKXXPPXXFXGGGXXXXGGPPP 486
G G F GG PP GG GGPPP
Sbjct: 763 GAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPP 799
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 491 GAPXFXXPPPPKXXXGGXXFPPPP 562
GAP PPPP GG PPPP
Sbjct: 574 GAPP--PPPPPPPMLGGPPPPPPP 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,359,038
Number of Sequences: 27780
Number of extensions: 183243
Number of successful extensions: 743
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2772493070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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