Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C17
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   1.2  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    29   1.2  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   3.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.3  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   8.3  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   8.3  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 450 RSTMEKLTRDTALLVTKNGHRNQSRDTVPRN 542
           + T+ ++ R TA  +TK+G  +QS  T+P N
Sbjct: 52  KGTIVRVVRHTASKLTKHGDSSQSLSTLPNN 82


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 560 YGPPKKIPYNHYQPEVAGFGEPPIQNSYDYNTHKKTYGEPPVDSYGAPI 706
           YGPP   P      ++ G    PI     +  H   +G+PPVD +  P+
Sbjct: 361 YGPPPSYP----DLKIPGVN-CPIPTGAQWGFHPGGWGKPPVDQFNRPL 404


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 268 NQETRRHDAHRQLPDGF*LPESENHLQTHIKNIEATLRTAQTKIWAAQTCLRTPEIQ 438
           N +++     + L +G  L ++E  L   IK ++ +L  A+TK+        TPE+Q
Sbjct: 37  NAKSKDEIIAKLLTEGQALSKNELKLNNTIKQLKKSLSEAETKLKRLDEKQATPELQ 93


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 566  PPKKIPYNHYQPEVAGFGEPPIQNSYDYNTHKKTYGEPPV 685
            PP K+   ++ P  +G   PP+Q     N +     + PV
Sbjct: 927  PPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPV 966


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 510 RNQSRDTVPRNVRASLSTDHQRRSRITTTNQKWLDLANRPFKTPMTITPTKRLTVSLRSI 689
           +N S+   P + ++S    H++R   TT +   +   N P +TP    P ++ T     I
Sbjct: 51  KNSSQIKSPSDYKSSA---HEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHTAPATPI 107

Query: 690 P 692
           P
Sbjct: 108 P 108


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 498 KNGHRNQSRDTVPRNVRASLSTDHQRR 578
           ++ H +++ +T+P N    L+ DHQR+
Sbjct: 309 RSPHSSRACNTIPSNKNDGLNDDHQRQ 335


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 581 PYNHYQPEVAGFGEPPIQNSY 643
           PY H QP++ G     + NSY
Sbjct: 463 PYQHGQPQIPGMLHASLSNSY 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,915
Number of Sequences: 5004
Number of extensions: 63147
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)