Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_C17
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 36 0.033
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 33 0.23
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 31 0.93
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 29 5.0
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996... 29 5.0
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 29 6.6
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 28 8.7
>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 36.3 bits (80), Expect = 0.033
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 333 RKSSTDAYQKYRGNATDRPNQNMGRPDLFTDPRNPGNRVRSTMEKL---TRDTALLVTKN 503
R D ++ +G A + QN GR D+ NP N R+T ++ T D L + +
Sbjct: 1087 RSRQNDPLRRDQG-AEENNMQNRGRSDVHPRDENPNNSERNTRQEKPNNTHDGNRLSSNS 1145
Query: 504 GHRNQSRDTVPRNVRASLSTD 566
G R SRD + R S+D
Sbjct: 1146 GARQVSRDRYRESTRKGRSSD 1166
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Frame = +3
Query: 303 TSRWILVT---RIRKSSTDAYQKYRGNATDRPNQNMGRPDLFTDPRNPGNRVRSTMEKLT 473
TS W+ + + R++ Y K+R D + G +D GN V T EKL
Sbjct: 3292 TSMWVDMKSSLKARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLE 3351
Query: 474 RDTALLVTKNGHRN----QSRDTVPRNVRASLSTDHQR 575
+D ++ + +N S D +P ++ + T H +
Sbjct: 3352 QDFLKIMERTDEKNSAVEDSWDLIPESILKCIVTIHNQ 3389
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 560 YGPPKKIPYNHYQPEVAGFGEP-PIQNSYDYNTHKKTYGEPPVDSYGAPI 706
YGPP P Q ++ G P P S+ Y + +G+PPVD +G P+
Sbjct: 334 YGPPPSYP----QLKIPGLNAPIPPGASFGYRPGE--WGKPPVDEHGRPL 377
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 548 SKPVYGPPKKIPYNHYQPEVAGFGEPPIQNSYDYNTHKKTYGEPPVDSYGAP 703
S+P Y P++ P Y +G PP Q Y + + YG P Y P
Sbjct: 775 SRPGYSQPEQRPA--YSQPYPPYGAPPQQPPYGAPSQQPPYGAPHPGHYQQP 824
>09_03_0003 +
11396076-11396386,11398803-11398869,11399194-11399698,
11400903-11401038,11401186-11401257,11401891-11401923,
11401924-11402047,11402387-11402437,11403437-11403563,
11404230-11404298,11404369-11404486,11404755-11405151
Length = 669
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 396 NMGRPDLFTDPRNPGNRVRSTMEKLTRDTALLVTKN-GHRNQSRDTVPRNVRASLSTDHQ 572
+MG + DPR G +++ K+ D ALL TK H + TV ++ +L+ +
Sbjct: 584 SMGNIEAIVDPRFGGEYDTNSVWKVV-DIALLCTKEASHERPTMSTVVAELKVALALEKA 642
Query: 573 RRS 581
R S
Sbjct: 643 RAS 645
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 609 LDLANRPFKTPMTITPTKRLTVSLRSI 689
LDL+ F+ P+ ITP+ L++SL+ +
Sbjct: 351 LDLSGNTFEGPIPITPSSNLSLSLKGL 377
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +3
Query: 369 GNA-TDRPNQNMGRPDLFTD-PRNPGNRVRSTMEKLTRDTALLVTKNGHRNQSRDTVPRN 542
GNA D+P Q + + L T P++ N++ + + + ++ +NQ +P++
Sbjct: 295 GNAPVDKPTQEVPQNQLPTQIPQSVQNQLPTQIPQSVQNQLPAQIPQSVQNQLPTQIPQS 354
Query: 543 VRASLSTDHQRRSRITTTNQKWLDLANRPFKTPMTITPT 659
V+ LST + + ++ T Q + + P T
Sbjct: 355 VQNRLSTQNPQSTQTLQTTQNLPSIQTQQLTQPQFYNQT 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,052,221
Number of Sequences: 37544
Number of extensions: 422968
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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