Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C14
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    32   0.12 
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    28   1.9  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   2.5  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   3.3  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   5.8  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   7.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   7.6  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +1

Query: 328  LIASLGIMVVAFLGCGS-ALMENV-TLLYGYIGSQLALFVFGLIGACVVLDFSTYDSSIQ 501
            L++S+ I++ A   CG  ALM  +  +LY Y+G +    +  ++GA   +      SS+Q
Sbjct: 838  LVSSITIVLKA---CGEEALMRKLGVVLYEYLGEEYPEVLGSILGAIKAIVSVVGMSSMQ 894

Query: 502  PLIRNVIVRL 531
            P IR+++ RL
Sbjct: 895  PPIRDLLPRL 904


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
 Frame = -2

Query: 285 PHPFIEAGLEANPET*CEYRYAKQP-----EHDVEAKQRVFYTINLGFQFPDH-GSLSAS 124
           PH F       N     +Y   +QP     EH + AK    Y++   FQ     GS   S
Sbjct: 87  PHLFTRCSCRCNKLLSGDYITQQQPIDASAEHSLNAKGINTYSLKNCFQRSGFIGSYEES 146

Query: 123 HFNNHKTIFRNEXCPFTVSIGIANSKXLRNSLV 25
            F+ H     +    F++ IG+ +    + SLV
Sbjct: 147 LFSGHMPYCSSVPFEFSIEIGVISFCRCKPSLV 179


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 248 QRHSANTDTPNNQSTTLKQNSVYFIQ*IWDSSFPTTGPCPPAILTITKQYFVTXP 84
           Q +  N  T N     L+Q S   +Q  ++   PTT P  P I  + +QY V  P
Sbjct: 506 QNNPVNPSTTNPFQNFLRQPSYQGMQ--FEQQQPTTIPLQPNIPVLNQQYPVMIP 558


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 427 LALFVFGLIGACVVLDFSTYDSSIQ 501
           L +F+F L G+C++  F  Y S+I+
Sbjct: 72  LQIFLFSLFGSCMLFRFIKYPSTIK 96


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 205 VLWLFGVSVFALCLWICFEPGFNEWMRILELQK 303
           V W+ GV++ A  + +    G N+W + L+ +K
Sbjct: 274 VEWVEGVAIMAAIVIVVTVGGVNDWQKELQFKK 306


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 386 ISADPHPRNATTMMPKEAMSIM*IPMKY 303
           +   P P   TT+ P  +MS + IP KY
Sbjct: 229 VKGHPSPATVTTLPPFMSMSTIPIPCKY 256


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 269 KPGSKQIQRHSANTDTPNNQST-TLKQNSVYFIQ 171
           KP S  ++ HS++TD+P + ST +  Q   YFIQ
Sbjct: 408 KP-STFVRPHSSSTDSPPSPSTPSNTQTDSYFIQ 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,030
Number of Sequences: 5004
Number of extensions: 70039
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)