Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C14
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539...    31   0.86 
04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    30   2.0  
12_02_1013 + 25305531-25305611,25305793-25305861,25306115-253062...    29   4.6  
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    28   8.0  
10_05_0098 + 9148424-9148682,9148817-9148905                           28   8.0  

>04_04_1608 -
           34753321-34753332,34753434-34753628,34753868-34753972,
           34754176-34754219,34754645-34754700,34755986-34756146
          Length = 190

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 13/168 (7%)
 Frame = +1

Query: 172 CIKYTLFCFNVVLWLFGVSVFALCLWICFEPGFNEWMRILELQKYFIGI--YIMLIASLG 345
           C++  L   N VL L G++V    LW+        W R +    Y + +  +I     LG
Sbjct: 9   CVQTGLKAVNSVLGLAGMAVILYALWM-----LRAWYRDVADLHYRLPVPWFIYTFIGLG 63

Query: 346 IMVVAFLGCGSALMENVTLLYGYIG----------SQLALFVFGLIGACVVLDFSTYDSS 495
           +  +  L C  A+  +V L   +             +   F+      C  +  S   + 
Sbjct: 64  VF-MCLLTCSGAITTDVFLNSNWEEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQ 122

Query: 496 IQPLIRNVIVRLIN-NPQHDGSRXDSQNGPRRDRLLRCRXAHGLHQSE 636
           +  ++  +++R +  + + D    D  + P R  LLR +  HG++ SE
Sbjct: 123 VLSIVLGMVLRALGPDRESDYDSDDDPSVPARLPLLRNQYQHGINYSE 170


>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +1

Query: 277 WMRILELQKYFIGIYIMLIA-SLGI--MVVAFLGCGSALMENVTLLYGYIGSQLALFVFG 447
           W+++     Y   +Y   I  +LG     +  LG  + + ENV L+ G + ++L  ++  
Sbjct: 31  WVQVAAGSAYVFPLYSHAIKEALGYNQKALTMLGVANDVGENVGLVPGVLANRLPPWLIL 90

Query: 448 LIG-ACVVLDFST 483
           LIG AC +L F T
Sbjct: 91  LIGSACALLGFGT 103


>12_02_1013 +
           25305531-25305611,25305793-25305861,25306115-25306208,
           25306292-25306396,25306577-25306660,25306793-25306866,
           25307936-25308001,25308892-25308948,25309433-25309477,
           25309602-25309655,25310097-25310237
          Length = 289

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +1

Query: 283 RILELQKYFIGIYIMLIASLGIMVVAFLGCGSALMENVTLLYGYIGSQLALFVFGLIG 456
           R+L +Q + + ++     SLG++ V + GC +   +   +  GY+G++ A+F   L+G
Sbjct: 17  RVLSIQSHTVQVF-----SLGLLWVCYSGCDNVCGK---MKDGYVGNKSAVFPLQLLG 66


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 609 SAPQQPIPSWTILR 568
           S+PQ+P+PSWT +R
Sbjct: 465 SSPQKPVPSWTSIR 478


>10_05_0098 + 9148424-9148682,9148817-9148905
          Length = 115

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 179 NTRCFASTSCSGCLAYRYSHYV 244
           N  C    SC GCL Y Y H V
Sbjct: 61  NVVCRRFWSCHGCLCYEYDHIV 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,609,399
Number of Sequences: 37544
Number of extensions: 498899
Number of successful extensions: 1155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)