Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_C12
(960 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.060
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.079
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.56
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.060
Identities = 23/78 (29%), Positives = 24/78 (30%)
Frame = -3
Query: 787 GGXXXGXGGXXXXXGFXXXVXXGXGGFXXXCXXRGXXXVWGGXXXXXGXGXGXXGXXXGE 608
GG G GG G GGF G +GG G G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 607 XGGXXGDXGGXXVGXXXG 554
GG G GG G G
Sbjct: 247 FGGGLGGFGGGPGGFGGG 264
Score = 27.9 bits (59), Expect = 2.2
Identities = 27/96 (28%), Positives = 27/96 (28%)
Frame = -1
Query: 858 GXXXXGXGGXVXGXXXXXXXXXXGGGXAXGXGXXGXXVGFXXXFXXGXXXFXXVVXXGGG 679
G G GG G GG G G G G F G F GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFG-GFGGEGHHHGGHGGFGGGPGGFE------GG 236
Query: 678 XXXGGGGXXXXXAGXXXXGXVGGXXGGXAAXRGGXG 571
GGG G G G GG GG G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.079
Identities = 23/87 (26%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Frame = +3
Query: 555 PXXXPTXXPPXSPXXPPXSPXXXPXXPXPXP-XXXXXPPXTXNXPRXXQXXXXPPXPXKT 731
P P P S PP S P P P P P P P P K+
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 732 XXXNP-XXXXXPPXPXXXPPXXXXXXP 809
P PP P PP P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.18
Identities = 30/141 (21%), Positives = 34/141 (24%), Gaps = 4/141 (2%)
Frame = +3
Query: 435 LPXXSXXXXPPPHPAXXFSXPXXXXXXXRXAXXXXXXXXXPXXXPTXXPPX---SPXXPP 605
+P PP PA P P P+ PP S PP
Sbjct: 1073 IPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Query: 606 XS-PXXXPXXPXPXPXXXXXPPXTXNXPRXXQXXXXPPXPXKTXXXNPXXXXXPPXPXXX 782
P P P P P + P PP P + P P
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 783 PPXXXXXXPXXXXXXXXXPPP 845
PP P PPP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/81 (22%), Positives = 20/81 (24%)
Frame = +3
Query: 567 PTXXPPXSPXXPPXSPXXXPXXPXPXPXXXXXPPXTXNXPRXXQXXXXPPXPXKTXXXNP 746
P P + P P P P P PP + P PP P T P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Query: 747 XXXXXPPXPXXXPPXXXXXXP 809
P P P
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPSP 1259
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.56
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +3
Query: 555 PXXXPTXXPPXSPXXPPXSPXXXPXXPXPXPXXXXXPPXTXNXPRXXQXXXXPPXP 722
P P+ P P PP P P P P PP P P P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/72 (25%), Positives = 19/72 (26%)
Frame = +1
Query: 571 PXPPPXRRXXPXXPPXXXXXXPPRXXXXXPXPPXXXTXPGXNNXXKXXPXXXKPXXKTHX 750
P PPP P P PP P PP PG P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPPAVSAGG 789
Query: 751 XXXXPPXPRXXP 786
P P+ P
Sbjct: 790 SRYYAPAPQAEP 801
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = -1
Query: 687 GGGXXXGGGGXXXXXAGXXXXGXVGGXXGGXAAXRGGXGXG 565
GG GGG G G G GG + RGG G
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,284
Number of Sequences: 5004
Number of extensions: 14657
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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