Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C11
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   8.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 616 DTRRFPLEAPSCALLFRXCR 675
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 572 STLKSEVAKXDRTIKIPGVSPWKLPRALS 658
           S++  +VA   R   IP +SP    +ALS
Sbjct: 79  SSVSLQVANLLRLFHIPQISPASTAKALS 107


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 578 LKSEVAKXDRTIKIPGVSP 634
           L+SE+A+ +  IK+  +SP
Sbjct: 175 LRSELAQCESNIKVISISP 193


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 779 WAVCTNPPFXPTAAP 823
           W V  +PP+ P  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 572 STLKSEVAKXDRTIKIPGVSPWKLPRALS 658
           S++  +VA   R   IP +SP    +ALS
Sbjct: 169 SSVSLQVANLLRLFHIPQISPASTAKALS 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,208
Number of Sequences: 438
Number of extensions: 4989
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)