Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_C10
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 37 0.025
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.1
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 6.6
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 6.6
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 6.6
03_01_0515 - 3864796-3865425 29 6.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 36.7 bits (81), Expect = 0.025
Identities = 25/75 (33%), Positives = 25/75 (33%)
Frame = +1
Query: 448 PXPPGXPXXXXKKXXGXGPPPXKXXQXFPKKXGXXPXXXGGGGXXXXKNXKXXXPPXGXP 627
P PP P PPP K P G P G K PP P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP-PKGPSPP---P 366
Query: 628 PPF*XXXKXGPPPPP 672
PP K GPPPPP
Sbjct: 367 PPPPGGKKGGPPPPP 381
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +3
Query: 414 PXPPQKIFXXGPXPPGXPXXXPKKXXGXXAPPXKGGXXFP 533
P PP K GP PP P KK G PP KGG P
Sbjct: 355 PPPPPK----GPSPPPPPPPGGKK-GGPPPPPPKGGASRP 389
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Frame = +1
Query: 448 PXPPGXPXXXXKKXX-GXGPPPXKXXQXFPKKXGXXPXXXGGGGXXXXKNXKXXXPPXGX 624
P PPG P + G GPP + P+ P G + PP
Sbjct: 57 PPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQ-----PPPPPP 111
Query: 625 PPPF*XXXKXGPPPPP 672
PPP PPPPP
Sbjct: 112 PPPSPPPSAPPPPPPP 127
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 610 PPXGXPPPF*XXXKXGPPPPP 672
PP G PPPF PPPPP
Sbjct: 43 PPQGAPPPF-----LAPPPPP 58
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 610 PPXGXPPPF*XXXKXGPPPPP 672
PP PPP GPPPPP
Sbjct: 620 PPGAPPPPPPPGKPGGPPPPP 640
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 610 PPXGXPPPF*XXXKXGPPPPP 672
PP PPP GPPPPP
Sbjct: 925 PPGAPPPPPPPGKPGGPPPPP 945
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +1
Query: 610 PPXGXPPPF*XXXK-XGPPPPP 672
PP PPPF + GPPPPP
Sbjct: 10 PPTPSPPPFSSRPRVVGPPPPP 31
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/51 (27%), Positives = 14/51 (27%)
Frame = +3
Query: 414 PXPPQKIFXXGPXPPGXPXXXPKKXXGXXAPPXKGGXXFPQKXGXXPXXXW 566
P PP P PP P P PP P K P W
Sbjct: 72 PPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPPAW 122
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/75 (25%), Positives = 20/75 (26%)
Frame = +1
Query: 448 PXPPGXPXXXXKKXXGXGPPPXKXXQXFPKKXGXXPXXXGGGGXXXXKNXKXXXPPXGXP 627
P PP P PPP P P + PP P
Sbjct: 567 PPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPN--RSVPPPPPPP 624
Query: 628 PPF*XXXKXGPPPPP 672
PP PPPPP
Sbjct: 625 PPLPNHSVLPPPPPP 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,034
Number of Sequences: 37544
Number of extensions: 287214
Number of successful extensions: 799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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