Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C09
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    27   4.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   4.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.3  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    26   6.3  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   6.3  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 423 LGREEILKLIPG-CSALVWISNLPITNEILGRSRYT 527
           +G   + K  P  C   +++S LPI N++  R RY+
Sbjct: 298 IGLHSLFKAYPSICDLSIFLSLLPIFNKVQDRMRYS 333


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 288 DDTMTKNLKVLVSSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKLI 452
           D+ + KN+KVLV  N+  P  L   ++ + ++   +   G+      REE L  +
Sbjct: 53  DENLKKNIKVLVPVNE-KPQKLDGKQEEYEIIVKLFFLDGENIDIKKREETLSQV 106


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 516 SRYTTEDREHGLRRATTTGNPXELRAR 596
           SRY  +DR+H  RR + +  P   R+R
Sbjct: 187 SRYDDDDRDHRSRRRSRSRRPGRSRSR 213


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 291  DTMTKNLKVLV---SSNDYPPTALKILEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGC 461
            D + + L+V V   SSND P T L  + + F+ LQ     +G E    G  +   LI  C
Sbjct: 916  DYLLRELEVSVASLSSNDQPSTGLYPILNMFSRLQYAQ-PYGNENEWTGLSQFEPLIFKC 974

Query: 462  SA 467
            +A
Sbjct: 975  TA 976


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 177 HLSMLIYKKVLCRFPAMITRFTQLYIGLLVAIPCLA 284
           H  ++  +K+L  +PA + + T LY+ +   + C A
Sbjct: 244 HAELIAIEKILEHYPASVFKETTLYVTVEPCLMCAA 279


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 573 CQWL*PGGDRAHDLQLCTG-CVQGF 502
           CQWL    DR   LQLC G C++ F
Sbjct: 92  CQWLLKTCDRRATLQLCDGLCLKLF 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,633
Number of Sequences: 5004
Number of extensions: 56007
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)