Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C09
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215...    29   5.0  
01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010           29   6.6  
11_03_0206 + 11655132-11655232,11655433-11655823                       28   8.7  
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631...    28   8.7  

>06_01_0296 -
           2156895-2157160,2157435-2157527,2157932-2158031,
           2158634-2158738,2158832-2158972,2159056-2159568
          Length = 405

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 613 SSAVYPRARNSXGLPVVVARRRPCSRSSVVYRLRPRISFVIGRLEI 476
           S+A +  A  S  +P    RR+ CS  S   R+ PR+  V+  L I
Sbjct: 180 STAKFCGACGSRAVPAEAGRRKQCSNESCKKRIYPRVDPVVIMLVI 225


>01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010
          Length = 454

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +1

Query: 529 LKIVSTVSAGLQPLATRXSCARGGIQLTNTPE 624
           L+IVS+ S G+  +    +C R G+++TNTP+
Sbjct: 70  LEIVSSFSVGIDRVDL-DACLRRGVRVTNTPD 100


>11_03_0206 + 11655132-11655232,11655433-11655823
          Length = 163

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 537 REHGLRRATTTGNPXELRARGYTADEHPRTSCPRPLXXLPWDSYCPALXRFTE 695
           R H  R      NP   R   ++  +  R+  PRP    PW   C +  + TE
Sbjct: 63  RAHACRAVPDGQNPPNPRPALHSISQSSRSFPPRPCLQPPWGRLCLSHAQTTE 115


>01_06_0649 +
           30861946-30862179,30862702-30862824,30863104-30863197,
           30863819-30863901,30863984-30864073,30864176-30864562,
           30864903-30864991,30867801-30867907,30868431-30868822
          Length = 532

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 517 AGTQLKIVST-VSAGLQPLATRXSCARGGIQLTNTPERPVPGR 642
           A T+  +VS  V    +P+  R SC  G ++LTN  E P P R
Sbjct: 293 ADTRKDVVSLEVIVSRKPIMRRLSCLFGSLKLTNNCE-PTPSR 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,784
Number of Sequences: 37544
Number of extensions: 394851
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)