Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C07
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   7.6  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   7.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   7.6  

>SPAC13G6.06c |||glycine cleavage complex subunit
            P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -3

Query: 407  AHFAALVMSSVRRSEHLTLQSLPGLAPLLHQYRSLIWNNP*SFEPLRFVFVLDVSRL-LS 231
            A+   + ++ +R +    L +   +A  L  +  L++ N  +       F+LD      +
Sbjct: 828  AYMRMMGLAGLRDASKAALLNANYMAKRLSSHYKLVYTNKNNL--CAHEFILDAREFKAT 885

Query: 230  CSTRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFELQVTE 51
                 T    R         + + P + N L  EPT+  +  ++  FC +++S   ++ E
Sbjct: 886  AGVDATDIAKRLQDYSFHAPTLSWP-IANTLMIEPTESESMYEMDRFCDALISIRQEIRE 944


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 152 LVNVLASEPTQRTTK-AKIINFCISIVSFEL 63
           L N L++   +  TK AK++NFCI I  F +
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 404  ALRKFTNVTA----SMPGTVGRTTARALCLILAAAKFHCELQLDFRFDLLETELCVLVAS 571
            A+ +F   TA    S+PGT   T  +    I+  ++       DFR  L    L  + + 
Sbjct: 824  AIERFCQFTALDPSSVPGTQLNTAIKVEDRIITVSELSVRFGRDFRAQLALLVLFWISSK 883

Query: 572  FFNVLDS 592
            F N++D+
Sbjct: 884  FGNIIDA 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,028
Number of Sequences: 5004
Number of extensions: 44918
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)