Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    82   9e-17
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   2.7  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   3.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.2  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   8.2  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 82.2 bits (194), Expect = 9e-17
 Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
 Frame = +2

Query: 131 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGS 310
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+   
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFY--- 60

Query: 311 XKVHEFRTXXXXXXXXXXXXERLAV--KCLGATKPTESQXGHYPAVISGIPXGRNIIHG 481
            K+  F              + +      LGA+ P +S  G       GI  GRN+ HG
Sbjct: 61  EKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDY-GIDLGRNVCHG 118


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 219 LKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYYXRALINY 82
           ++P+F K + +    P+      T + V+SRC  +  YY  +LI +
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYYGLSLIPF 206


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 262 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTC 95
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTC 337


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 216 KPFFSKRSIMVPTRPRCTPSGLT 148
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 436 GIVPGLXFSWFSGAQAFDGQSF 371
           G+   L F+WF+GA   D  SF
Sbjct: 431 GLAQSLPFNWFNGADPADWLSF 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,432
Number of Sequences: 5004
Number of extensions: 39091
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)