Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_C01
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.4  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   7.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   7.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +3

Query: 684 PPPXPPPXXPPXXPXXPXXXXXXXXXPXXPXXPPXPPPP 800
           P   P P      P  P         P  P  PP P PP
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 624 PPXPPXXPXPXXXPPXPPXXPPPXPPPXXP 713
           P  PP        PP P   P P PP   P
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 776 PPPPPPP 796
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 779 PPPPPPP 799
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 305 PFFIRIIVNIRGYGVYLPVAFFCVGYNKGAHD 210
           P  +R  +NI     Y+P+  +CV Y    +D
Sbjct: 314 PSSLRFCLNILSIFTYVPMILYCV-YTTATYD 344


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 305 PFFIRIIVNIRGYGVYLPVAFFCVGYNKGAHD 210
           P  +R  +NI     Y+P+  +CV Y    +D
Sbjct: 39  PSSLRFCLNILSIFTYVPMILYCV-YTTATYD 69


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
 Frame = +2

Query: 686 PXXXPPXX--PPPXPXXPXXXXXXXXXPXXPXPPPPPP 793
           P   PP    P P    P         P  P  P PPP
Sbjct: 68  PVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 724 GXXGGXXGGGXGGGXXGGXG 665
           G      GGG GGG  G  G
Sbjct: 85  GENNDDSGGGRGGGRDGDRG 104


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  KLDVQDERSNPSHLCGGT 130
           K+D+ +E    SH  GGT
Sbjct: 315 KIDICNEEERNSHCLGGT 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,618
Number of Sequences: 336
Number of extensions: 4771
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)