Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B23
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   190   3e-49
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   188   7e-49
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   180   2e-46
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    32   0.13 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    30   0.39 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   1.6  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    28   1.6  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   2.1  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   2.7  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.3  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    26   8.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   8.3  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    26   8.3  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  190 bits (462), Expect = 3e-49
 Identities = 90/164 (54%), Positives = 111/164 (67%)
 Frame = +1

Query: 154 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRG 333
           LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHFRAPS+I  K VRG
Sbjct: 28  LLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRG 87

Query: 334 MIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 513
           M+PHKT RG+ AL  L+  +G PPPFD               LKPGR YC VGRLS E+G
Sbjct: 88  MLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVG 147

Query: 514 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKADN 645
           WKY D+V KLE++RK K+     Y+ KL +  K A  K + + N
Sbjct: 148 WKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAKAASSVN 189



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +3

Query: 87  KAIVIDGRGHLLGRLAAVIAK 149
           K +VID +GHLLGRLA+V+AK
Sbjct: 6   KVVVIDAKGHLLGRLASVVAK 26


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  188 bits (459), Expect = 7e-49
 Identities = 90/164 (54%), Positives = 110/164 (67%)
 Frame = +1

Query: 154 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRG 333
           LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHFRAPS+I  K VRG
Sbjct: 28  LLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRG 87

Query: 334 MIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 513
           M+PHKT RG+ AL  L+  +G PPPFD               LKPGR YC VGRLS E+G
Sbjct: 88  MLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVG 147

Query: 514 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKADN 645
           WKY D+V KLE++RK K+     Y+ KL +  K A  K +   N
Sbjct: 148 WKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIASAKEASPVN 189



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +3

Query: 87  KAIVIDGRGHLLGRLAAVIAK 149
           K +VID +GHLLGRLA+V+AK
Sbjct: 6   KVVVIDAKGHLLGRLASVVAK 26


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  180 bits (439), Expect = 2e-46
 Identities = 80/138 (57%), Positives = 100/138 (72%)
 Frame = +1

Query: 154 LLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRG 333
           LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  NP+RG FHFRAPS+I  K VRG
Sbjct: 28  LLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRG 87

Query: 334 MIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIG 513
           M+PHKT RG  AL+ L+  +G PPPFD               LKP R YC +GRLS E+G
Sbjct: 88  MLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVG 147

Query: 514 WKYRDVVRKLEDKRKGKA 567
           WKY+++V KLE++RK K+
Sbjct: 148 WKYKNIVSKLEERRKIKS 165



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +3

Query: 87  KAIVIDGRGHLLGRLAAVIAK 149
           K ++ID +GHL+GRLA+ +AK
Sbjct: 6   KLVIIDAKGHLMGRLASTVAK 26


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 556 KGKAVKRVAYEKKLKRITKDAGEKVSKAD 642
           KGK V R+ Y+ K   +  D+GE+++K D
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVD 568


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 535 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA--DNTIHYH 660
           R  + KR+ K  +R+AYE+ LKR  K   EK +K+  D TI +H
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDATIDHH 688


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 493 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 627
           R S E   K  D   K E+KR+ K  K+   EKK K+  K+  +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -2

Query: 293 KWKGPRAGFT----LHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLGDDCRQT 126
           +WKGP    +     HLL   ++ L+  L+    + + ++R     + +RRT G   R+T
Sbjct: 210 EWKGPPLDLSNDENRHLLHPAELQLAATLRLPCLVYLDNKRRIFAEWHNRRTQGLSFRKT 269

Query: 125 AQQMTTAIDHYGLIAKARHFHNE 57
             Q  + +D        + FH+E
Sbjct: 270 DAQRASRVDVNKASRLWKAFHDE 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 598 KRITKDAGEKVSKADNTIHYHHPILWIXLGLRXYNKN*XFWGC 726
           +R+T+ A + V   ++ +H   P  ++ LGL   N N  F+GC
Sbjct: 458 ERVTQRASDAVYDVEDFVHVPTPETFVNLGL---NANPTFFGC 497


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 529 VVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKADNTIHYHHPIL 672
           + +K E K K K ++  AY   LKR+ K A      A  T  Y  P+L
Sbjct: 260 IAKKKETKDKIKELR--AYNDTLKRLGKLAARSGPSASETFRYFLPML 305


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 380 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 294
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 599 RGSPRMLVRKCXKPTTPFTTIIQSYGY 679
           RG  ++L+R   K    F T++Q +GY
Sbjct: 20  RGRRQVLIRPSSKVIVKFLTVMQKHGY 46


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 401 GHPSYVRSLLRAFLPRSVLCGIIP 330
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 599 RGSPRMLVRKCXKPTTPFTTIIQSYGY 679
           RG  ++L+R   K    F T++Q +GY
Sbjct: 20  RGRRQVLIRPSSKVIVKFLTVMQKHGY 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,237
Number of Sequences: 5004
Number of extensions: 63176
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)