Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_B22
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 104 1e-22
07_01_0756 + 5819367-5820038,5820847-5821005 103 1e-22
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 39 0.006
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 32 0.55
12_02_1207 + 26995852-26996568 30 2.2
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 30 2.9
01_01_0093 + 727977-729854,729877-729930 30 2.9
11_01_0395 + 2999855-2999920,3000605-3002191 29 3.8
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 104 bits (249), Expect = 1e-22
Identities = 47/72 (65%), Positives = 61/72 (84%)
Frame = +1
Query: 223 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 402
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ L P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE-TLVPGLKDEVMKITPVQ 96
Query: 403 KQTRAGQRTRFK 438
KQTRAGQRTRFK
Sbjct: 97 KQTRAGQRTRFK 108
Score = 74.1 bits (174), Expect = 1e-13
Identities = 43/96 (44%), Positives = 55/96 (57%)
Frame = +2
Query: 437 RAFVAIGDNXGHIGLGVKCSXEVPTAIRGAIIPC*VVCFXSSKKLLG*PDRKATHRPLXX 616
+AFV +GDN GH+GLGVKC+ EV TAIRGAII + + G + P
Sbjct: 108 KAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKV 167
Query: 617 SPGKCGSVTVRLIPGPSWXLEIVSGPXPXKLXQMXG 724
+ GKCGSVTVR++P P IV+ P K+ Q G
Sbjct: 168 T-GKCGSVTVRMVPAPR-GSGIVAARVPKKVLQFAG 201
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 103 bits (248), Expect = 1e-22
Identities = 48/72 (66%), Positives = 61/72 (84%)
Frame = +1
Query: 223 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 402
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ L P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE-QLVPGLKDEVMKITPVQ 99
Query: 403 KQTRAGQRTRFK 438
KQTRAGQRTRFK
Sbjct: 100 KQTRAGQRTRFK 111
Score = 73.3 bits (172), Expect = 2e-13
Identities = 43/96 (44%), Positives = 54/96 (56%)
Frame = +2
Query: 437 RAFVAIGDNXGHIGLGVKCSXEVPTAIRGAIIPC*VVCFXSSKKLLG*PDRKATHRPLXX 616
+AFV +GD GH+GLGVKC+ EV TAIRGAII + + G K P
Sbjct: 111 KAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKV 170
Query: 617 SPGKCGSVTVRLIPGPSWXLEIVSGPXPXKLXQMXG 724
+ GKCGSVTVR++P P IV+ P K+ Q G
Sbjct: 171 T-GKCGSVTVRMVPAPR-GSGIVAAHVPKKVLQFAG 204
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/94 (31%), Positives = 43/94 (45%)
Frame = +2
Query: 443 FVAIGDNXGHIGLGVKCSXEVPTAIRGAIIPC*VVCFXSSKKLLG*PDRKATHRPLXXSP 622
FV +GD HI LGVKC+ T + GAII + F ++ + H
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAII---LAMFRCAEGATRETISRKPHTVSCKVA 56
Query: 623 GKCGSVTVRLIPGPSWXLEIVSGPXPXKLXQMXG 724
K GSVTVR++ P +V+ P K+ + G
Sbjct: 57 DKYGSVTVRMML-PPMGSSVVATRVPKKVLKFAG 89
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 437 RAFVAIGDNXGHIGLGVKCSXEVPTAIRGA 526
RA V +GD GH+G+GV + EV AI A
Sbjct: 193 RAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222
>12_02_1207 + 26995852-26996568
Length = 238
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 620 PGKCGSVTVRLIPGPSWXLEIVSGPXPXKLXQMXGC 727
PG VRL PG SW L + +G ++ GC
Sbjct: 39 PGALPGGGVRLDPGKSWTLNVAAGTKAARIWPRTGC 74
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 726 VXDCYTLSSLGSXXHPGXNFG*KPPYSCHLPTXFALTXTPXLXEGT 863
V C T+ +GS H NFG + PY+ +LP +++ P GT
Sbjct: 702 VKACATIIWIGSALHAAVNFG-QYPYAGYLPNRPSVSRRPMPEPGT 746
>01_01_0093 + 727977-729854,729877-729930
Length = 643
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 647 RLIPGPSWXLEIVSGPXPXKLXQMXGC 727
RL PG SW L++ +G P ++ GC
Sbjct: 58 RLDPGTSWALDVPAGAAPGRVWARTGC 84
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 310 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKGIC 447
+F +++ ++IDF L L D + I+P+ R G++T + C
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKTLVQHAC 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,501,522
Number of Sequences: 37544
Number of extensions: 410984
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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