Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_B20
(1081 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.052
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.19
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 1.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.9
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.052
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 876 PXXXXPPPPPPPXXXXPXPPPXP 944
P PPPPPPP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 31.1 bits (67), Expect = 0.28
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 884 PPPPPPXPPXXXXXXXPPPP 943
PPPPPP P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 884 PPPPPPXPPXXXXXXXPPPP 943
PPPPPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.12
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 891 PPPPPPPXXXXPXPPPXP 944
PPPPPPP PPP P
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.28
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 884 PPPPPPXPPXXXXXXXPPPP 943
PPPPPP P PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 30.7 bits (66), Expect = 0.37
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Frame = +3
Query: 876 PXXXXPPPPPPP---XXXXPXPPPXP 944
P PPPPPPP P PPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 0.85
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 894 PPPPPPXXXXPXPPPXP 944
PPPPPP P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAP 748
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 891 PPPPPPPXXXXPXPPPXP 944
P PPP P P PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 884 PPPPPPXPPXXXXXXXPPPP 943
PPPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 1016 PPXPPPPPP 990
PP PPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 1015 PPXPPPPPP 989
PP PPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 884 PPPPPPXPP 910
PPPPPP PP
Sbjct: 775 PPPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 1015 PPXPPPPPPXXXXAQXK 965
PP PPPPPP A K
Sbjct: 945 PPPPPPPPPLVSAAGGK 961
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 1016 PPXPPPPPP 990
PP PPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 26.2 bits (55), Expect(2) = 0.19
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 884 PPPPPPXPP 910
PPPPPP PP
Sbjct: 945 PPPPPPPPP 953
Score = 23.8 bits (49), Expect(2) = 0.19
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 854 ALSSFFXXXXPPPPPPXP 907
+L + PPPPPP P
Sbjct: 897 SLPTIITHPTPPPPPPLP 914
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect(2) = 1.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 1016 PPXPPPPPP 990
PP PPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 1015 PPXPPPPPP 989
PP PPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 884 PPPPPPXPP 910
PPPPPP PP
Sbjct: 189 PPPPPPPPP 197
Score = 20.6 bits (41), Expect(2) = 1.5
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -3
Query: 1013 PXPPPPPPXXXXSP 972
P P PPPP P
Sbjct: 234 PLPAPPPPPPPTLP 247
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 1016 PPXPPPPPP 990
PP PPPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 1015 PPXPPPPPP 989
PP PPPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.2 bits (55), Expect(2) = 1.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 884 PPPPPPXPP 910
PPPPPP PP
Sbjct: 306 PPPPPPPPP 314
Score = 20.6 bits (41), Expect(2) = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 752 SSGGXXXPXSPPPP 793
S+ G P PPPP
Sbjct: 300 SANGGLPPPPPPPP 313
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +3
Query: 876 PXXXXPPPPPPPXXXXPXP--PPXP 944
P P PPPPP P P PP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 876 PXXXXPPPPPPPXXXXPXPPPXP 944
P P PPPP P PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAP 1721
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 891 PPPPPPPXXXXPXPPP 938
PPPPPPP PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,562
Number of Sequences: 5004
Number of extensions: 27802
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 567771870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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