Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B19
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 707  PPPPPPP 727
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 707  PPPPPPP 727
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 21  LTIGEFLLRFCLGPAAV 71
           L I +FL+ FC+ P  V
Sbjct: 60  LAISDFLMMFCMSPPMV 76


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 21  LTIGEFLLRFCLGPAAV 71
           L I  FL+ FC+ P  V
Sbjct: 94  LAISNFLMMFCMSPPMV 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,898
Number of Sequences: 438
Number of extensions: 1936
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)