Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B18
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    35   0.017
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    32   0.12 
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    31   0.28 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    29   0.86 
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    29   0.86 
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    29   1.1  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   2.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   3.5  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   4.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   4.6  

>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = +3

Query: 123 YQKSNCYPRRDA-VDVLTEFLPKFRWKEGKKRIFDIGCADGSVTNIISAFCNNDYEVFEA 299
           Y  +  Y R  + V  LT+ + K         + D+GC DG +TN + + C     +  +
Sbjct: 5   YWSAKDYQRNASFVPKLTKDIVKRINLSSSDELLDLGCGDGVLTNELVSQCRRVVGIDAS 64

Query: 300 CDINERAVKYATEYYGTDKMIFRVMDIEGQLPKEMNGKFDNVFSFYTLQWIKNQEK 467
            D+ + A +     Y       +++D   ++P E    FD VFS   L WI  Q K
Sbjct: 65  PDMIKAARELGLNAYVIPGE--KLLD-ASEIPSE---SFDVVFSNAALHWIMRQPK 114


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 26/89 (29%), Positives = 37/89 (41%)
 Frame = +3

Query: 201 EGKKRIFDIGCADGSVTNIISAFCNNDYEVFEACDINERAVKYATEYYGTDKMIFRVMDI 380
           EG   I DIGC  G  T I      +   V    DI+   +  A E    +  +  + D+
Sbjct: 46  EGPSFILDIGCGSGISTQI----GESQGHVVVGMDISPSMLSVALESQEIEGDLL-LCDM 100

Query: 381 EGQLPKEMNGKFDNVFSFYTLQWIKNQEK 467
              +P    G FD V S   +QW+ N +K
Sbjct: 101 GTGVPFRP-GTFDGVISISAIQWLLNADK 128


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
 Frame = +3

Query: 147 RRDAVDVLTEFLPKFRWKEGKKRIFDIGCADG-SVTNIISAFCNNDYEVFEACDINERAV 323
           RR       E L   +   G+K I +IGC  G ++  I+    N++ ++F A D +E+A+
Sbjct: 98  RRWIAQEFPELLDLLKEDAGEKSILEIGCGAGNTIWPILKENKNSNLKIF-AVDYSEKAI 156

Query: 324 KYATE--YYGTDKMIFRVMDIEGQ--LPKEMNGKFDNVFSFYTLQWIK--NQEKAFQNIY 485
               +   Y        V D+ G   L        D +   +    +     ++A +N+Y
Sbjct: 157 DVVKQNPLYDAKFCSASVWDLAGSDLLRSIEEASIDAITLIFCFSALSPDQWQQAIENLY 216

Query: 486 DLMAKDGECLLTLLARIPVYSL 551
            L+   G  L     R+ +  L
Sbjct: 217 RLLKPGGLILFRDYGRLDLTQL 238


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -2

Query: 611 ELIDVFKQ--ISPCVGI-L*CIEEAVYRYPSQESQQAFTVL---CHQVVDVLKCFLLILD 450
           E +D+ KQ   + CV I L      +Y Y + +S +   +        +DV+K FL++LD
Sbjct: 435 EELDIIKQHFFTACVEIYLSYCNTLIYLYLADDSIEGSKICLSTARAAIDVIKGFLVVLD 494

Query: 449 PLQR 438
           P+ +
Sbjct: 495 PISK 498


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 210 KRIFDIGCADGSVTNIISAFCNNDY--EVFEACDINERAVKYATE 338
           + + DIGC D    + +   CN+    E     DINE++++ ATE
Sbjct: 29  RSLLDIGCGDARFLSYLVP-CNDQVPIEFLAGIDINEQSIERATE 72


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 4/117 (3%)
 Frame = +3

Query: 195 WKEGKKRIFDIGCADGSVTNIISAFCNNDYEVFEACDI----NERAVKYATEYYGTDKMI 362
           WK+    I D  C  G ++  +  +C     +  + D+    NE+  K           +
Sbjct: 74  WKKSGMSILDFACGTGLISQHLFPYCKQIVGIDVSQDMVDVYNEKFRKMNIPKERACAYV 133

Query: 363 FRVMDIEGQLPKEMNGKFDNVFSFYTLQWIKNQEKAFQNIYDLMAKDGECLLTLLAR 533
             + D++G   +  + +FD V        IK+ ++    +  L+  +G   +  L +
Sbjct: 134 LSLDDLDGNGDEPFSTEFDAVVCSMAYHHIKDLQEVTNKLSKLLKPNGRLFVADLIK 190


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 156 AVDVLTEFLPKFRWKEGKKRIFDI---GCADGSVTNIISAFCNND 281
           AVDV+++    +  K G   +  I   GC+ GSV  + ++ C ND
Sbjct: 405 AVDVISDGNSTYVIKNGNPLLGQITASGCSLGSVMGVTASICQND 449


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
 Frame = +3

Query: 345  GTDKMIFRVMDIEGQLPKEMNGKFDNVFSFYTLQWIKNQEKAFQNIYDLMAKDGECLLTL 524
            G D  + + +  + +  K ++  + +  + + L++   +        D++ K  E    +
Sbjct: 665  GQDDSLIQQIISDPETVKTLSETYSSEDALHVLKFFVRERSITNKYEDILYKILEACF-M 723

Query: 525  LARIPVYSLFNALKDTDTWGY------LLKYINQFISPYHDVSDPDVIIQSLLEK 671
              RIP+  + N L    T  +      LLK++N + +  H   D   +I++ +EK
Sbjct: 724  QFRIPIQHVLNILVKDGTLNFCFLKPLLLKWMNDYETRIHQNDDEIQVIKNDIEK 778


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -3

Query: 604 LMYLSKYPHVSVSFSALKRLYTGIRA--RRVNRHS 506
           L+++ ++P+VSV   +++++YT   +  RR+  H+
Sbjct: 230 LLFMYQFPYVSVPIYSIRQMYTCFYSLFRRIREHA 264


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 491 QVVDVLKCFLLILDPLQRIERENVIKLPIH 402
           Q+  ++K F    DPL +IE+  V+  PIH
Sbjct: 520 QMSQLVKNFYAFEDPLLQIEKSLVLNKPIH 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,172
Number of Sequences: 5004
Number of extensions: 71701
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)