Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B18
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    29   0.042
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 0.042
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 632 NIMVRRDELIDVFKQISPCVGIL*CIEEAVYRYPSQESQQAFTVLCHQVVDVLKCFLLIL 453
           NI +RR  L      I PCVGI   +   V+  PS   ++    LC  ++  L  F L+L
Sbjct: 242 NITMRRKTLFYTVNLIIPCVGIT-FLTVLVFYLPSDSGEK--VSLCSSILLSLTVFFLLL 298


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 632 NIMVRRDELIDVFKQISPCVGIL*CIEEAVYRYPSQESQQAFTVLCHQVVDVLKCFLLIL 453
           NI +RR  L      I PCVGI   +   V+  PS   ++    L   ++  L  F L+L
Sbjct: 229 NITLRRKTLFYTVNLIIPCVGIS-FLSVLVFYLPSDSGEK--VSLSISILLSLTVFFLLL 285


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 730 MSLNSYFFCLQRTSTYWKPT 671
           + LN+Y+F L++   +W P+
Sbjct: 227 IGLNTYYFFLRQAFPFWLPS 246


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 730 MSLNSYFFCLQRTSTYWKPT 671
           + LN+Y+F L++   +W P+
Sbjct: 227 IGLNTYYFFLRQAFPFWLPS 246


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 486 DLMAKDGECLLTLLARIPVYSLFNALKDTDTWGYLLKYINQFISPYHDVSDPD 644
           D    D    ++ L  +P YS       TD W  LLK+ N     +   SD D
Sbjct: 132 DSAFSDKNIHVSFLRTVPPYS-----HQTDVWVELLKHFNYMKVIFIHSSDTD 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,783
Number of Sequences: 438
Number of extensions: 4921
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)