Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B10
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     30   2.9  
12_02_1178 + 26718283-26719368                                         28   8.8  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  

>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +3

Query: 300 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTVKRA 464
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +  A
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAIANA 206


>12_02_1178 + 26718283-26719368
          Length = 361

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 582 PGGNAWYLNSPVGFRHL*LERRFX*XSSGGRSXWKNASNAP 460
           PGG   Y  + +G R     R F   S+GG   WKNA  AP
Sbjct: 131 PGGERLYALTSLGER---FPRAFEVLSTGGGWSWKNAPVAP 168


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 249 NESAN---ARGEAVCVLGALPLPRSLTRCAR 332
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768,235
Number of Sequences: 37544
Number of extensions: 400939
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)