SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B09
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    36   0.007
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    35   0.013
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    34   0.030
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.28 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    31   0.28 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    30   0.37 
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.37 
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.48 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.84 
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    29   0.84 
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    29   1.1  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    28   1.5  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    28   2.0  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   2.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   4.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   4.5  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    26   6.0  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   6.0  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   6.0  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   7.9  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   7.9  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   7.9  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
 Frame = +2

Query: 197 IEHHTKEFHKTLEQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 367
           I+   K     LEQ+  +L ++++A++    ++ + D S S   +L A AK    A  DA
Sbjct: 98  IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154

Query: 368 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 481
              A E   +++ +IER+A    K A  + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
 Frame = +2

Query: 227 TLEQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 397
           T+E  ++SL KSK +     F +  ++  + +L   N + + L   + +A  KA+++LEQ
Sbjct: 8   TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65

Query: 398 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 529
           +    +   E L K H +    E+   + +EKL A ++   + S++L
Sbjct: 66  TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
 Frame = +2

Query: 221  HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 391
            H+T+ +Q    +         +A  +  ES L   N   ++    L ++N    K +E +
Sbjct: 625  HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684

Query: 392  EQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKKVSSNVQ 556
            +   +NI+   E+LRK+   +   +  A  LRE +        T++  +       S+ +
Sbjct: 685  DSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAK 744

Query: 557  ETNEKLAPKIKXAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 688
             TN  L+ ++  + +D  + T  V    Q++   KQ   S++NS+
Sbjct: 745  NTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 30/131 (22%), Positives = 53/131 (40%)
 Frame = +2

Query: 80  PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 259
           P S S   + A    +      L +   V R    F + +EH+     K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229

Query: 260 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK 439
           SKDA     A      S+     +   S + +L   N K++ +L+    ++ R       
Sbjct: 230 SKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLN-KSRASLQHKIMSLSRNIIRRVF 288

Query: 440 AHPDVEKNATA 472
             P+V  + +A
Sbjct: 289 HKPEVHLDPSA 299


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 3/161 (1%)
 Frame = +2

Query: 167 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 337
           ++   DFFK +    ++ H TL ++ NSL+    +K        +  G   +  +LN   
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115

Query: 338 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 517
           + LQG +  A          S       + E       V +N  + R+ L   V  ++Q 
Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167

Query: 518 SQKLAKKVSSNVQETNEKLAPKIKXAYDDFAKNTQEVIKKI 640
              L +     V++    L P     Y    KNT +  KK+
Sbjct: 168 GCSLLRITKKKVRQRKVSLDP--ISGYLMLDKNTGKAYKKL 206


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = +2

Query: 374 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 529
           K KE +E   Q ++ +ER  E LRK   D  K+      + +AA+     + +  E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186

Query: 530 AKKVSSNVQETNEKLAPKIK 589
            K +      T +KL  KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 17/81 (20%), Positives = 38/81 (46%)
 Frame = +2

Query: 326 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 505
           N  + ++  AL +   KA + LE+  ++ E + EE+   H    +  T+ +   +   + 
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396

Query: 506 TVQESQKLAKKVSSNVQETNE 568
            +QE  ++ K +    Q+ +E
Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 293 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 430
           KDG+++   +LN FAK L  +    + +A +   +    IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 21/88 (23%), Positives = 46/88 (52%)
 Frame = +2

Query: 389 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 568
           ++   Q+IE T   L K   D+E++      +++   +  V + Q+  ++++  +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553

Query: 569 KLAPKIKXAYDDFAKNTQEVIKKIQEAA 652
            L+   K + DD+    +EV+ K++  A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/69 (24%), Positives = 38/69 (55%)
 Frame = +2

Query: 374 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 553
           K+++ LE S Q +E    E +   P+V++     +EK ++ V+   +E     +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185

Query: 554 QETNEKLAP 580
           + ++  ++P
Sbjct: 186 RSSSRSISP 194


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 272 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 427
           +D + A+ +   SVLQ+L+   + +QG LG   N     AL Q + QN++   E
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/88 (27%), Positives = 45/88 (51%)
 Frame = +2

Query: 197 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 376
           IE   K F K ++   NS  K+ +A  F     +G++  ++ + A  ++L   L +    
Sbjct: 73  IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125

Query: 377 AKEALEQSRQNIERTAEELRKAHPDVEK 460
               +EQ+R   E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +2

Query: 227 TLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 388
           T++ +  SL K  D     +  ++  ES L  L      L  A      L D+  KAK  
Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411

Query: 389 LEQSRQNIERTAEE 430
           LEQ+R  +ERT  E
Sbjct: 412 LEQARIELERTQRE 425


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 404 ASTVPKPPWPCRSRLRALPG 345
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +2

Query: 302 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 481
           S  +   + A  K L GA      KAKE  ++ R   +RTA E+RK    +E+     R 
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199

Query: 482 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKXAYDDFAKNTQE 625
           +  A  Q    + Q     +++ ++ + + L  +I+ A  + +  T E
Sbjct: 200 ERAAEAQRVAGKEQ-----LANILKHSTDLLEARIERANINISAQTSE 242


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 173 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 292
           D   +F D++ H K FH   E+  +   +  +K   D  K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +2

Query: 341 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 496
           S++  L + N + KE +E     +      RT +E        EKN   LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 404 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 583
           +NI +  E+ R      + NA+ +  K Q   + T++  Q+LAK +    +++ E+L+  
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192

Query: 584 IKXAYDDFAKN 616
                 + AKN
Sbjct: 193 RTELKKEIAKN 203


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/86 (15%), Positives = 41/86 (47%)
 Frame = +2

Query: 380 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 559
           K    ++R+N++     + +  P+++ + +    +L+  +++++   Q  +    + V+E
Sbjct: 81  KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140

Query: 560 TNEKLAPKIKXAYDDFAKNTQEVIKK 637
             E+    +K  +  F  N  E +++
Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 209 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ-GALGDA 367
           +K+   + E+Q   +T      DFS   K   +     L+AF K L+  + GDA
Sbjct: 89  SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
 Frame = +2

Query: 197 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 376
           I +  KE   TL +Q  +L    ++       K  +ES+L + N   + L  +       
Sbjct: 574 ISNAVKENSNTLSEQIKNLESELNSS------KIKNESLLNERNLLKEMLATSRSSILSH 627

Query: 377 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 556
                  S  NI+   + + ++  ++EKN    R ++ A  ++  + +Q L  ++ +  +
Sbjct: 628 -----NSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRK 682

Query: 557 E-TNEKLAPKIKXAYDDFAKNTQEVIKK 637
           E  N K   ++       A N  E  KK
Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKK 710


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 137 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 313
           C  + +G  +RR  P +++ I      ++ KTL + FN+  + +++  + KA ++G   V
Sbjct: 13  CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72

Query: 314 LQQL 325
             Q+
Sbjct: 73  NNQI 76


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
 Frame = +2

Query: 251 LTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 430
           +  S D+++ S+   D ++  L+ +NA     Q  +     K+ E L  SRQ+    A+E
Sbjct: 28  IASSSDSEEESEL--DTNKQALEHINA-----QKNITHNENKSAEPL--SRQSTILDADE 78

Query: 431 LRKAHPDVEKNATAL--REKLQAAVQNTVQE-----SQKLAKKVSSNVQETNEKLAPKIK 589
             +   D   NA     R   ++A+    Q      + + A  + +N   +   L+    
Sbjct: 79  GNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAANLRNNSINSEAALSTTSS 138

Query: 590 XAYDDFAKNTQEVIKKIQE 646
              DDFA+  +E+ +++QE
Sbjct: 139 LLDDDFARRLEEIDRQVQE 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,640
Number of Sequences: 5004
Number of extensions: 36836
Number of successful extensions: 191
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -