Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B08
         (1078 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 1034 PPLXXPPPPPP 1066
            PP   PPPPPP
Sbjct: 338  PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 997  GXAAXPXPPPPXPPPP 1044
            G +  P  P P PPPP
Sbjct: 333  GDSDTPPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 1018 PPPPXPPPPXXXXXXP 1065
            PP P PPPP      P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 783 PPPAPXPAPPXXXXP 827
           P PAP P PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 941  PAXXXAPSXXXSPXPXXXPGXPPAPXP 1021
            P     P+    P P   PG PP+  P
Sbjct: 34   PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 995  PGXPPAPXPXPLXPPLXXPPPP 1060
            PG  P+P   P  P    PP P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNP 42


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1018 PPPPXPPP 1041
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1021 PPPXPPPP 1044
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,988
Number of Sequences: 438
Number of extensions: 7533
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36029799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)