Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B05
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 93  TDHHHVRSSTRWSFKIKILRIPYSEV 16
           TDHH   +++ ++  I+++R+PY+ V
Sbjct: 63  TDHHLKWNASEFA-GIRVIRVPYNRV 87


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 740 SCLYWCCXSC-G*GYPALNGKLTG 808
           SC  WCC +  G G  +  G +TG
Sbjct: 10  SCCCWCCDNLGGPGSSSAGGVVTG 33


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 718 RPSRHNFSRRSINSFLCSSCGMNSSHQALNNFKVIMNNL 602
           R  R       I S L +SC  ++++   NN+K +  N+
Sbjct: 292 RRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNI 330


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 703 YGVMAVVLNKTSFLPLLVLPKLWVRLSRS*WQA 801
           +G   + + + +F PLL L KL V+   S W A
Sbjct: 100 HGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGA 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,129
Number of Sequences: 438
Number of extensions: 5123
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)