Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B03
         (1374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.6  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 1.5
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
 Frame = +1

Query: 142 PXXXPPSPPSXXXPXXXXXTXLXSXPHPFXXXGXXLHAR--PXXRXPPPPXPXPP 300
           P    PS      P       + S P  F        A   P    PPPP P PP
Sbjct: 143 PASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 274 PPPPXPXPPXL 306
           P PP P PP L
Sbjct: 236 PAPPPPPPPTL 246


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +1

Query: 136 PPPXXXPPSPPSXXXPXXXXXTXLXSXPHPFXXXGXXLHARPXXRXPPPPXPXPP 300
           PPP    P+P     P       +   P P    G           PPPP P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV------AGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,212,778
Number of Sequences: 5004
Number of extensions: 10138
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 759101996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)