Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_B02
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    87   2e-18
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   1.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.5  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   6.0  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 35/51 (68%), Positives = 43/51 (84%)
 Frame = +2

Query: 89  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 241
           M +HK+F  K+KLAK  +QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/74 (32%), Positives = 31/74 (41%)
 Frame = -2

Query: 382 WIQLTLNKGRSAAAVLXXXXXXXXXXXXXFLTLQGFYYITFNTFTSLQLELCPSPVTPLS 203
           W+ L   K R+AAA                   Q    IT N ++S+ L    +P TP S
Sbjct: 291 WMILKYQK-RAAAAAAASATAPPQVTSPMVSQTQPVNPITPN-YSSIPLPAERNPKTPQS 348

Query: 202 VISNSVSCAHPYPL 161
             +N V CA P PL
Sbjct: 349 FSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 223  SPVTPLSVISNSVSCAHPYPLRNGS 149
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 211 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCXKQS 59
           P  +I +S S  HP PL +G VL +   +   NNK  +   +   SC + S
Sbjct: 109 PAMLILDSKSI-HPLPLTDGEVLHRWECEVDSNNKTTIDLKYWYCSCSQFS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,584
Number of Sequences: 5004
Number of extensions: 38531
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)