Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A24
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.4  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = +3

Query: 147 KQYGKLNGYS*ERCYRYP*NKQHA-SGEWSQSTNILKRTGSSSARRKLHNSNSWMSRQTS 323
           +QY KL+    +        K+++ S E  Q     KR            S +   R+ S
Sbjct: 17  RQYEKLHNEKEKFLEERTSRKRYSRSREREQKLYKNKREYRKYRETSKERSRNRTERERS 76

Query: 324 HRPPRLSSGASYISAWITKSNYRQIS*RYSTGHKK 428
             P  +S+  S  + +   +NY   +  Y+T +KK
Sbjct: 77  KEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = -2

Query: 758  HCTMAFNQ-----GSLCFTERILSSCFLSCTA 678
            HCT+   Q       +CFT R + SC   CTA
Sbjct: 1686 HCTIHRTQVKETDDKICFTMRPVVSCASGCTA 1717


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 703 DKILSVKHKLPWLK 744
           D +L V  K+PW K
Sbjct: 126 DNMLEVSSKMPWFK 139


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 557 NNGSSPILQLSTLVGMRREYIQPTRPTHASTASNRRGL 670
           +N SSP L L    G+  ++ +     HA+   N + L
Sbjct: 371 SNSSSPSLDLGKEGGLEAQWSRVLGRVHATIERNEKRL 408


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 703 DKILSVKHKLPWLK 744
           D +L V  K+PW K
Sbjct: 142 DNMLEVSSKMPWFK 155


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 703 DKILSVKHKLPWLK 744
           D +L V  K+PW K
Sbjct: 199 DNMLEVSSKMPWFK 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,276
Number of Sequences: 438
Number of extensions: 5534
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)