Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A23
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    28   2.1  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 44  LIQFVAARTLSFDFAKIQ----NEILENFRFRVRYCFRHGFGLGSSRQLLQGILKKWVRG 211
           +  ++  + ++ DF+ +Q    N + +NF F        G G  S  ++   + K W+RG
Sbjct: 1   MTDYIKDKAIAADFSSVQFRFDNYLKQNFNFGRSALLNSGNGRDSGSKMGSVVCKHWLRG 60


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 115 FSFSCSLLFSPRLRSRQLPATSSRDLEKMGQRVRDA 222
           + FS   L+ P  RSRQLP  +   L+  G+R  D+
Sbjct: 202 YVFSSLFLYHPLSRSRQLP--TKMQLDGSGERKTDS 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,942
Number of Sequences: 5004
Number of extensions: 48455
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)