Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A16
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.41 
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    28   2.2  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   8.8  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 639 HNTKYNQYLXMXTTTCNCNSRXRVVYGGNSADSTRE 746
           +++ YN+   M T++C+C+S  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 463 ETMSESFTETYNPRSEARFHNPIPRMXELPTAMV*TSILNSSVGSSLPCG 612
           + M  S T+ ++  +  R + P  R+ + P  +  TS  NSS  +  PCG
Sbjct: 18  KAMLLSGTDLWHTAAIPRLNIPSIRLSDGPNGIRGTSFFNSSPSACFPCG 67


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 166 HFLPKNSEGRXWYXQAFLHGRTXNXWLVRSRSXGIIE 276
           H  PK S    W     LHG T   W++   + GI+E
Sbjct: 527 HLPPKLSP---WNMMIVLHGLTTIGWILSRENLGIVE 560


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 93  KLLGLYFAMCMLAGSAGVVELF 158
           KLLGLY  + +L G  GV+ LF
Sbjct: 377 KLLGLYIFIGVLLGLIGVIGLF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,069
Number of Sequences: 5004
Number of extensions: 62094
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)