Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A12
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    29   0.64 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   3.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.9  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   7.9  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 300 TCEMEGATFFYPDDKFEFDAVTTYWNTSQPFEWISIGISSQMAKG--VFETVDGVSIMDV 473
           TC  EG    +        AV ++   S PF  I++   +Q A G  +  ++  V + DV
Sbjct: 72  TCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQLWDV 131

Query: 474 YNKWK-PGEPNDSHNNE 521
            ++ K   + ND+HN++
Sbjct: 132 RSEQKLIRQWNDAHNDD 148


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 621 WNVNCDIPNTDYAYSDVLGPMLQDVFD 701
           WN++ D+   +Y +SD  G + Q+V +
Sbjct: 554 WNISDDLGQVEYIFSDKTGTLTQNVME 580


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 567  DCAKSFPFICKKTLASLEWNVNCDIPNTDYAYSDVLGPMLQDVFD 701
            DC +S    C +   +L +NV+ DIP         +G ML+ + D
Sbjct: 1868 DCMQSVYSACAEKGINLSYNVSPDIPFFTAGDGMKIGQMLKSILD 1912


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
            Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 4/142 (2%)
 Frame = +3

Query: 48   LDSWRDARSCLLVSVYRINIERIFKFKMNNXXXXXXXXXXXXXXXXXHGQREN---KFFR 218
            L   RD R+C+  +++ +   ++ K K  N                   +  N    F  
Sbjct: 785  LSDMRD-RNCIFTNIF-LKAAKVAKQKNGNSFLSKVFITITMLTLFLGSKANNWDINFSD 842

Query: 219  KDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTTYWNTSQPFE 395
             D   +   E   +I T +K W +  K+      + FF P+D  E +     +    P  
Sbjct: 843  DDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDWYPNR 901

Query: 396  WISIGISSQMAKGVFETVDGVS 461
                G  S + KG+ ET D +S
Sbjct: 902  ARDPGTLSHLVKGLKETADHLS 923


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 621 WNVNCDIPNTDYAYSDVLGPMLQDV 695
           WN++ D+   +Y +SD  G + Q++
Sbjct: 585 WNISDDLGQIEYIFSDKTGTLTQNI 609


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 201 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 296
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 247 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 396
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,154
Number of Sequences: 5004
Number of extensions: 74296
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)