Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A11
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    62   1e-10
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    61   2e-10
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    27   4.6  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   4.6  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 31/55 (56%), Positives = 37/55 (67%)
 Frame = +3

Query: 153 SRXLXSVYSEKXETVXGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQPYWVSKK 317
           +R   S+YS K  +V      LPFVFKAPIRPDLV  VH ++ KN RQPY VS+K
Sbjct: 4   ARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 QXXAESWGTGRSFPPIP-XXGVGYPKSRQGXLGN-XXXGELFSPXKT 459
           Q  AESWGTGR+   IP   G G  +S Q   GN    G +F+P KT
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKT 107


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/55 (54%), Positives = 37/55 (67%)
 Frame = +3

Query: 153 SRXLXSVYSEKXETVXGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQPYWVSKK 317
           +R   S+Y+ K  +V      LPFVFKAPIRPDLV  VH ++ KN RQPY VS+K
Sbjct: 4   ARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 QXXAESWGTGRSFPPIP-XXGVGYPKSRQGXLGN-XXXGELFSPXKT 459
           Q  AESWGTGR+   IP   G G  +S Q   GN    G +F+P KT
Sbjct: 61  QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKT 107


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 227 VQGAHTSGPGQ*CSRFYVQKLQAAL-LGEQEAGHKXXP 337
           VQ A T+G G  CS  Y   LQAA+  G   + H   P
Sbjct: 27  VQIAGTNGKGSICSYIYTSLLQAAIKTGRYTSPHFLEP 64


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 218 PVRVQGAHTSGPGQ*CSRFYVQKLQAALLGEQ 313
           PV VQG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,724
Number of Sequences: 5004
Number of extensions: 48993
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)