Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A11
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           41   0.001
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    40   0.002
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997...    29   6.4  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.5  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 RSWSQXXAESWGTGRSFPPIP-XXGVGYPKSRQGXLGN-XXXGELFSPXKT 459
           R+  Q  AESWGTGR+   IP   G G  ++ QG  GN    G +F+P KT
Sbjct: 61  RAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKT 111



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = +3

Query: 153 SRXLXSVYSEKXE--TVXGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQPYWVSKK 317
           +R L SV + + +  T   ++  L  VF+AP+RPD+V  VH  +  N RQPY VS++
Sbjct: 5   TRPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRR 61


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 153 SRXLXSVYS-EKXETVXGAAKPLPFVFKAPIRPDLVNDVHVSMXKNSRQPYWVSKK 317
           +R L SV + E       A   +P V +APIRPD+V   H  +  N RQPY VS++
Sbjct: 5   ARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRR 60



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 313 RSWSQXXAESWGTGRSFPPIP-XXGVGYPKSRQGXLGN-XXXGELFSPXK 456
           R+  Q  AESWGTGR+   IP   G G  ++ QG  GN    G +F+P K
Sbjct: 60  RAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 109


>03_02_0631 +
           9969841-9969868,9969965-9970082,9970186-9970828,
           9971146-9971935,9972002-9972051,9972618-9972704
          Length = 571

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 746 KXPPPXLXXPXRGAPPNFXKXFXXXXXPPPPQK 844
           K  PP    P + +PP   K       PPPPQK
Sbjct: 77  KVSPPPPQKPDKVSPPPAQKPSKVSPPPPPPQK 109


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 363  PPNSXVRGGVPXVPSRXPR*XXXGGTXFPPQNPWGLGPXXLTPKKEKRPLXXPXFLPGSP 542
            PP   V GG+   P+  P     GGT  PP    G+ P    P +    +  P   PG+P
Sbjct: 1149 PPPPPV-GGLGGPPAPPPPAGFRGGTP-PPNAHGGVAPPP-PPPRGHGGVGGPPTPPGAP 1205

Query: 543  AP 548
            AP
Sbjct: 1206 AP 1207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,256,977
Number of Sequences: 37544
Number of extensions: 529377
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)