Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A10
         (992 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic int...    29   3.9  
U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate fi...    29   3.9  
U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate fi...    29   3.9  
Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    28   9.0  

>X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic
           intermediate filamentprotein protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 719 HLHTKILGRNSTGKTRPPGSHTPXSH 642
           H H KI GRNS G   PP S    SH
Sbjct: 485 HGHLKIYGRNSGGINSPPDSIVMESH 510


>U49831-2|AAK68314.1|  526|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform c protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 719 HLHTKILGRNSTGKTRPPGSHTPXSH 642
           H H KI GRNS G   PP S    SH
Sbjct: 468 HGHLKIYGRNSGGINSPPDSIVMESH 493


>U49831-1|AAA93405.1|  543|Caenorhabditis elegans Intermediate
           filament, b protein2, isoform a protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 719 HLHTKILGRNSTGKTRPPGSHTPXSH 642
           H H KI GRNS G   PP S    SH
Sbjct: 485 HGHLKIYGRNSGGINSPPDSIVMESH 510


>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 208 N*NXGNHXPKEKKNRVXRLKKPEETRK 288
           N N GN  P+EKK      KKPEE ++
Sbjct: 57  NVNIGNPAPEEKKKEEKVEKKPEENKE 83


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 235 KEKKNRVXRLKKPEETRKLAPRKK 306
           K+ KNR  ++K P +T++LA +KK
Sbjct: 83  KKSKNRKSKMKPPPDTQELANKKK 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,525
Number of Sequences: 27780
Number of extensions: 253837
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)