Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A05
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.9  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.8  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    27   3.8  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   6.7  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   8.8  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   8.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 410 SPEARECGFPVQAQPVPVYIVPERAPAEAALSLWRSLKSADPMALSTFLSL 258
           +P + E    +    V   I+P     E ++S   SL S+DP+  STF SL
Sbjct: 129 TPSSTESSSLLDPSSVSSAILPSSTSVEVSISS-SSLSSSDPLTSSTFSSL 178


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/78 (23%), Positives = 34/78 (43%)
 Frame = +3

Query: 441 NFVPTNKPTTNLKRPRRFANQGNSPQRPFPNAPQLQHAGRREWTTCSNRKVGASLSAAHS 620
           N + T+K    L +    ++   SPQ+   +   L H+     ++C N     + SA+HS
Sbjct: 93  NRLMTSKRPNELFKTSSMSSDCYSPQKSRESLNSLCHSPAPSVSSCGNALNNDNTSASHS 152

Query: 621 DVINRNDYSAGGKLNLFR 674
            + +   +      NLF+
Sbjct: 153 -LTDEQPFETDSSANLFK 169


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 171 GTCLPLAKHAHKQTNNATVFGHLDLCRITLSVDCSTC 61
           G C   ++   K TN +++  H D C+++   +  TC
Sbjct: 418 GVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 238 GRPPEVPSEFTCEAAGLSPRTCRHVSTARQARAQTNKQRYSLWTS 104
           G  P +P     E  G+SP  CR ++   Q   + +K+    WT+
Sbjct: 157 GDDPSLPGP-PHEVFGISPEQCRELTITVQEALEKSKEFIRCWTN 200


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 444 FVPTNKPTTNLKRPRRFANQGNSP-QRPFPNAPQLQH 551
           F+P  K T+N+  P  + N   SP Q+P    P++Q+
Sbjct: 169 FLPIEKLTSNVAYPPNYNNYLKSPYQQPTNFPPEIQY 205


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 464 WFVCGNKIDLCXANARAASPEARECGFPVQAQ 369
           +F C   + +  A    AS  AR CG+PV  Q
Sbjct: 37  YFACHTFLAISSAYGVIASVVARLCGYPVMGQ 68


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = -1

Query: 186 LRARVGTCLPLAKHAHKQTNNATVFGHLDLCRITLSVDCSTCKMMNDQILRIPYSEXG 13
           L+  +  CL +A    K  N      HL+  ++ L  +C+  K   D++++   ++ G
Sbjct: 134 LQGNISQCLSVASTFQKLHNMYMGSTHLNFKKLVLECECAFQKTWLDELVQYLVNDSG 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,598
Number of Sequences: 5004
Number of extensions: 78771
Number of successful extensions: 240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)