Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_A04
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.65
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 28 1.5
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 3.5
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 4.6
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.6
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 6.1
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.0
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 8.0
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.65
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 213 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE-IVKSYFPIQFR 389
ET K S K +K + + +++++ K NT++ A Q W+K KE ++ I +
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKEQDIQDELRIANK 187
Query: 390 VIFTEQTVKLINKRDHHALKLIDQTK 467
+ E+ L R H K+ + K
Sbjct: 188 DGYVERQEFLAKTRAAHEEKIREMKK 213
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 443 PQVDRPNKTTTKLHSVTPKTKPARKSPGSLPPVLENNRVTSRS----CPPRTTVPE 598
P V + + L SVT T A+ P L L NNR+TS S P+T +PE
Sbjct: 214 PDVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPE 269
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 180 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 296
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 389 SDLHRADCQAHKQKGPSRPQVDRPNKTTTKLHSVTPKTKPARKSPGSLPPVLENNRVTSR 568
S + R KQ S + T TP+TKP+ K PPV N++ ++
Sbjct: 598 SSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPSHK-----PPVSYKNKLVTQ 652
Query: 569 SCPPR-TTVPEAR 604
S R T+V E R
Sbjct: 653 SAIGRSTSVREGR 665
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 413 QAHKQKGPSRPQVDRPNKTTTKLHSVTPKTKPARKSPGSLPP 538
++H +K S+P PN+ TT S +TK A P S+ P
Sbjct: 594 KSHAKKLQSKPSSVVPNRITTDPFS--SQTKEATSKPSSISP 633
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 458 PNKTTTKLHSVTPKTKPARKSP-GSLP-PVLENNRVTSRSCP 577
P L +TP T PA K+P SLP ++ N TS+ P
Sbjct: 36 PTSKQAALSDITPDTPPAFKTPYSSLPYNLVPQNSSTSKKRP 77
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 671 VFEGVSGAITVDDTVIT 621
V G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 316 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 137
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 136 EASAHTARTKA 104
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 416 AHKQKGPSRPQVDR---PNKTTTKLHSVTPKTKPARKSPGSLPPVLENNRVTSRSCPPRT 586
AH + PSRP++ R P KT+ +VTP+ S L +++RS P +
Sbjct: 536 AHPNQ-PSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKP 594
Query: 587 TVPEAR 604
+ R
Sbjct: 595 STTSLR 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,713
Number of Sequences: 5004
Number of extensions: 70325
Number of successful extensions: 253
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -