Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_A01
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.54 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 29/98 (29%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
 Frame = +1

Query: 598 PXLPRCA-QLXXXPPXXXXXRXXSLLXXPXXXXPXXXXXAXPPQXXLXLPXPSXPPPXPT 774
           P  PR A      PP     R  S    P    P     A PP   L     +  PP PT
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP---LGNASRTSTPPVPT 419

Query: 775 XXXXHP-AXXXIPPXX--SXXLXIPTXPXXPPXHPKXP 879
                P A   +PP    S  +  P  P  PP  P  P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = +1

Query: 694 PXXXXXAXPPQXXLXLPXPSXPPPXPTXXXXHPAXXXIPPXXSXXLXIPT-XPXXPPXHP 870
           P     + PP     LP PS PP  P      PA   +PP       +P   P  PP  P
Sbjct: 416 PVPTPPSLPPSAPPSLP-PSAPPSLPMGA---PAAPPLPPSAPIAPPLPAGMPAAPPLPP 471

Query: 871 KXP 879
             P
Sbjct: 472 AAP 474


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +1

Query: 718 PPQXXLXLPXPSXPPPXPTXXXXHPAXXXIPPXXSXXLXIPTXPXXPPXHPKXP 879
           PP     L  P+  PP P+     PA    PP  S    IP+    PP  P  P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPA--SAPPIPSKAPPIPS-SLPPPAQPAAP 180



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +1

Query: 718 PPQXXLXLPXPSXPPPXPTXXXXHPAXXXIPPXXSXXLXIPTXPXXP 858
           PP+  +  P P+  PP P+     P    +PP       + + P  P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAP--PIPSSLPPPAQPAAPVKSPPSAP 188



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +1

Query: 742 PXPSXPPPXPTXXXXHPAXXXIPPXXSXXLXIPTXPXXPPXHP 870
           P PS PPP P      P     PP  S  L  P  P  P   P
Sbjct: 145 PRPSIPPPSPASAP--PIPSKAPPIPS-SLPPPAQPAAPVKSP 184


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/90 (23%), Positives = 28/90 (31%)
 Frame = +1

Query: 592  RXPXLPRCAQLXXXPPXXXXXRXXSLLXXPXXXXPXXXXXAXPPQXXLXLPXPSXPPPXP 771
            R P +P+ +     PP          +  P    P     + PP        PS PPP P
Sbjct: 1010 RVPPVPKLSS--KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067

Query: 772  TXXXXHPAXXXIPPXXSXXLXIPTXPXXPP 861
                  P+     P  S    +P     PP
Sbjct: 1068 APSSEIPSI----PAPSGAPPVPAPSGIPP 1093


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 724 QXXLXLPXPSXPPPXPTXXXXHPAXXXIPPXXSXXLXIPTXPXXPP 861
           Q  L L  P  PPP        PA   +PP  +  +  P  P  PP
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPP-PAPIMGGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,577
Number of Sequences: 5004
Number of extensions: 8585
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)