Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP13_F_P24
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 44 2e-04
01_06_0498 + 29810105-29810401,29811448-29812726,29813969-298142... 33 0.39
06_01_0227 - 1733119-1734099 32 0.67
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 32 0.67
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 31 0.89
03_01_0441 + 3418622-3420988 30 2.1
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 30 2.7
03_06_0644 + 35253858-35254112,35254301-35254390,35254475-352545... 30 2.7
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 30 2.7
10_08_0357 - 17158414-17160150,17160534-17160710 29 3.6
10_08_0359 - 17167829-17169595,17169976-17169996 29 4.7
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 29 6.3
11_02_0012 - 7346282-7347136,7347234-7347593 28 8.3
09_02_0006 + 2913672-2913770,2913870-2914157 28 8.3
06_02_0199 - 12940459-12940689,12940787-12940930 28 8.3
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 224 KFIGDSNQRTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEG-FKVVSVDASDKM 400
+ +GD RT+ Y+D L+G TVLD CGTGI S+ G +V++VD S KM
Sbjct: 268 EMLGDK-VRTEAYRDALLGNPSLMNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKM 326
Query: 401 LKHA 412
+ A
Sbjct: 327 VSVA 330
>01_06_0498 +
29810105-29810401,29811448-29812726,29813969-29814204,
29814327-29814968
Length = 817
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 314 DAACGTGIDSMMLVNEGFKVVSVDASDKMLKHAL 415
DA CGTG S+ + VV+ DAS+ ++HA+
Sbjct: 593 DAGCGTGQASISIAEHYDSVVATDASEGQIRHAV 626
>06_01_0227 - 1733119-1734099
Length = 326
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 305 TVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 412
TV DA CGTG ++ L ++G V++ D S M+ A
Sbjct: 152 TVCDAGCGTGSLAIPLASQGASVLASDISAAMVSEA 187
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 248 RTQNYKDFLIGLLKNNGCKTVLDAACGTGIDSMMLVNEGFK-VVSVDASD 394
RT Y+ ++ K K V+D CGTGI S+ G K V +V+AS+
Sbjct: 67 RTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASE 116
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 308 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 412
V+D CG GI S L G V +DA DK +K A
Sbjct: 73 VIDVGCGGGILSEPLARMGATVTGIDAVDKNIKIA 107
>03_01_0441 + 3418622-3420988
Length = 788
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -1
Query: 444 GFFLLSQRALRACFNILSEASTDTTLNPS---FTSIME 340
GFF++ QR LR+ +LSE+ ++T + TSI+E
Sbjct: 326 GFFIVEQRVLRSADGLLSESQVESTWETAIAKITSILE 363
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 302 KTVLDAACGTGIDSMMLVNEG-FKVVSVDASDKMLK 406
+ VLD CGTG+ S+ G +V +VDASD L+
Sbjct: 83 EVVLDVGCGTGVLSIFCAFAGAARVYAVDASDIALQ 118
>03_06_0644 +
35253858-35254112,35254301-35254390,35254475-35254596,
35254731-35254830,35254955-35255001,35255178-35255256,
35255722-35255769
Length = 246
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 236 DSNQRTQNYKDFL-IGLLKNNGCKTVLDAACGTGIDSMMLVNEGFKVVSVDASDKMLKHA 412
D QRT + + G L TVL CG G D + L G VV +D D ++ A
Sbjct: 53 DLGQRTPAVVELVHSGTLPAGDATTVLVPGCGAGYDVVALSGPGRFVVGLDICDTAIQKA 112
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 393 SEASTDTTLNPSFTSIMESIPVPQAASKTVLQPL 292
S A ++ T + S SI+ES+P PQ +QPL
Sbjct: 57 SMAESENTTSTSHVSIVESLPEPQEPKVEKIQPL 90
>10_08_0357 - 17158414-17160150,17160534-17160710
Length = 637
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 308 VLDAACGTGIDSMMLVNEGFKVVSVDASD 394
V+ + CG G+ + +L ++G+KVV V+ D
Sbjct: 139 VVGSGCGGGVAAAVLASKGYKVVVVEKGD 167
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 308 VLDAACGTGIDSMMLVNEGFKVVSVDASDKMLK 406
++ + CG G+ + +L + G+KVV V+ D K
Sbjct: 91 IVGSGCGGGVAAAVLASAGYKVVVVEKGDYFTK 123
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 308 VLDAACGTGIDSMMLVNEGFKVVSVDASD 394
V+ + CG G+ + +L + G+KVV V+ D
Sbjct: 265 VVGSGCGGGVAAAVLASAGYKVVVVEKGD 293
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 579 YSSNKWANEFPRHMTASN*VSGRNVSMSCGSVSQFASSITQSSYLGFF 436
Y KW+N FPR T +G+ + SV S + Y+GF+
Sbjct: 162 YFKGKWSNPFPRERT----TTGKFHRLDGSSVDAPFMSSREDQYIGFY 205
>09_02_0006 + 2913672-2913770,2913870-2914157
Length = 128
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 655 DKQEPAWLQAFREGAQTQLLHPXVSVLIQQMGERVPETYDGVE 527
DK+ A+L F +T LH +S Q E +PE ++ ++
Sbjct: 34 DKRSTAFLSKFFPMGKTNALHGRISSFQQTRDETIPEAWEHLQ 76
>06_02_0199 - 12940459-12940689,12940787-12940930
Length = 124
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 259 LQRLLDRS-LEEQRLQDCFGRRLWYW 333
L+R D + +E RL+D GRR W+W
Sbjct: 65 LRRAADEAKVEVARLRDVAGRRFWWW 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,079,584
Number of Sequences: 37544
Number of extensions: 439175
Number of successful extensions: 1103
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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